Task 12516576

Name	famous_wtws_1799_200_007115683_1
Workunit	7313370
Created	24 Jan 2011, 2:24:21 UTC
Sent	24 Jan 2011, 2:24:32 UTC
Report deadline	25 Apr 2011, 9:51:43 UTC
Received	3 Feb 2011, 15:14:38 UTC
Server state	Over
Outcome	Computation error
Client state	Compute error
Exit status	193 (0x000000C1) EXIT_SIGNAL
Computer ID	844607
Run time	1 days 16 hours 33 min 47 sec
CPU time	1 days 16 hours 15 min 29 sec
Validate state	Invalid
Credit	2,810.31
Device peak FLOPS	3.43 GFLOPS
Application version	UK Met Office FAMOUS v6.11 i686-apple-darwin
Stderr	<core_client_version>6.10.17</core_client_version> <![CDATA[ <message> process exited with code 193 (0xc1, -63) </message> <stderr_txt> tialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_006185_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... [2011- 1- 1 21: 7:17:] :: BOINC:: Initializing ... ok. [2011- 1- 1 21: 7:17:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_006185_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_2 ... success! [2011- 1- 1 21:19:15:] :: BOINC:: Initializing ... ok. [2011- 1- 1 21:19:15:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_006185_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_2 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 4 0:49:20:] :: BOINC:: Initializing ... ok. [2011- 1- 4 0:49:20:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_006185_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_8 ... success! ====================================================== DONE :: 7 starting structures 6145.48 cpu seconds This process generated 7 decoys from 7 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2011- 1- 4 1:12:15:] :: BOINC:: Initializing ... ok. [2011- 1- 4 1:12:15:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_000788_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 4 2:14:53:] :: BOINC:: Initializing ... ok. [2011- 1- 4 2:14:53:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_000788_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage_3_iter1_3 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 4 3:22: 9:] :: BOINC:: Initializing ... ok. [2011- 1- 4 3:22: 9:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_000788_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage3 ... success! Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage4_kk_1 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 4 4:44:58:] :: BOINC:: Initializing ... ok. [2011- 1- 4 4:44:58:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_000788_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 4 5:46:23:] :: BOINC:: Initializing ... ok. [2011- 1- 4 5:46:23:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_000788_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 5 15: 3:42:] :: BOINC:: Initializing ... ok. [2011- 1- 5 15: 3:43:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_000788_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage3 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage4_kk_1 ... success! ====================================================== DONE :: 6 starting structures 5418.79 cpu seconds This process generated 6 decoys from 6 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2011- 1- 5 16: 3:49:] :: BOINC:: Initializing ... ok. [2011- 1- 5 16: 3:49:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/t482__boinc_nmr_cm_rnd1_cs_frags_loopbuild_threading_tex.boinc.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 5 17:26:44:] :: BOINC:: Initializing ... ok. [2011- 1- 5 17:26:44:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/t482__boinc_nmr_cm_rnd1_cs_frags_loopbuild_threading_tex.boinc.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... [2011- 1- 5 17:28:22:] :: BOINC:: Initializing ... ok. [2011- 1- 5 17:28:22:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/t482__boinc_nmr_cm_rnd1_cs_frags_loopbuild_threading_tex.boinc.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. ====================================================== DONE :: 20 starting structures 10377.3 cpu seconds This process generated 20 decoys from 20 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.5 build 10H574 Fri Jan 7 06:25:44 2011 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x95f5346b 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x003f5826 7 0x00450bd8 8 0x004698c0 9 0x000026b6 10 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffd4bc edx: 0x95eed0fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffd4f8 esp: 0xbfffd4bc ss: 0x0000001f efl: 0x00000206 eip: 0x95eed0fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x5l5_1499_200_007069072/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x5l5_1499_200_007069072/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x5l5_1499_200_007069072/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x5l5_1499_200_007069072/lib/libirc.dylib 0x916ff000 - 0x9170dfff /usr/lib/libz.1.dylib 0x92896000 - 0x92899fff /usr/lib/system/libmathCommon.A.dylib 0x95eec000 - 0x96093fff /usr/lib/libSystem.B.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=49151, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... Signal 3 received, exiting... (1066): called boinc_finish CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... BUFFIN: Read Failed: No such file or directory BUFFIN: C I/O Error feof - Unit 60 - Return code = 1 BUFFIN: Read Failed: No such file or directory BUFFIN: C I/O Error feof - Unit 61 - Return code = 1 BUFFIN: Read Failed: No such file or directory BUFFIN: C I/O Error feof - Unit 68 - Return code = 1 BUFFIN: Read Failed: No such file or directory BUFFIN: C I/O Error feof - Unit 69 - Return code = 1 SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.6 build 10J567 Sun Jan 9 07:11:06 2011 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x919f846b 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x919920fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec ss: 0x0000001f efl: 0x00000206 eip: 0x919920fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libirc.dylib 0x91991000 - 0x91b38fff /usr/lib/libSystem.B.dylib 0x98854000 - 0x98862fff /usr/lib/libz.1.dylib 0x99107000 - 0x9910afff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=1061, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.6 build 10J567 Mon Jan 10 07:40:57 2011 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x919f846b 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x003f5826 7 0x00450bd8 8 0x004698c0 9 0x000026b6 10 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffd47c edx: 0x919920fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffd4b8 esp: 0xbfffd47c ss: 0x0000001f efl: 0x00000206 eip: 0x919920fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libirc.dylib 0x91991000 - 0x91b38fff /usr/lib/libSystem.B.dylib 0x98854000 - 0x98862fff /usr/lib/libz.1.dylib 0x99107000 - 0x9910afff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=11231, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.6 build 10J567 Tue Jan 11 04:07:33 2011 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x919f846b 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x919920fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec ss: 0x0000001f efl: 0x00000206 eip: 0x919920fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libirc.dylib 0x91991000 - 0x91b38fff /usr/lib/libSystem.B.dylib 0x98854000 - 0x98862fff /usr/lib/libz.1.dylib 0x99107000 - 0x9910afff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=1059, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.6 build 10J567 Fri Jan 14 15:53:49 2011 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x919f846b 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x919920fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec ss: 0x0000001f efl: 0x00000206 eip: 0x919920fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libirc.dylib 0x91991000 - 0x91b38fff /usr/lib/libSystem.B.dylib 0x98854000 - 0x98862fff /usr/lib/libz.1.dylib 0x99107000 - 0x9910afff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=1055, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.6 build 10J567 Fri Jan 14 19:41:33 2011 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x919f846b 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x919920fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec ss: 0x0000001f efl: 0x00000206 eip: 0x919920fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libirc.dylib 0x91991000 - 0x91b38fff /usr/lib/libSystem.B.dylib 0x98854000 - 0x98862fff /usr/lib/libz.1.dylib 0x99107000 - 0x9910afff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=1061, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.6 build 10J567 Mon Jan 17 08:29:47 2011 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x919f846b 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x919920fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec ss: 0x0000001f efl: 0x00000206 eip: 0x919920fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libirc.dylib 0x91991000 - 0x91b38fff /usr/lib/libSystem.B.dylib 0x98854000 - 0x98862fff /usr/lib/libz.1.dylib 0x99107000 - 0x9910afff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=1068, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... Signal 3 received, exiting... (1018): called boinc_finish [2011- 1-19 10: 5:45:] :: BOINC:: Initializing ... ok. [2011- 1-19 10: 5:45:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/med_targets_2KUT_pcs_med_files1.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1-19 11:13:14:] :: BOINC:: Initializing ... ok. [2011- 1-19 11:13:14:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/med_targets_2KUT_pcs_med_files1.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1-19 11:13:59:] :: BOINC:: Initializing ... ok. [2011- 1-19 11:13:59:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/med_targets_2KUT_pcs_med_files1.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. ====================================================== DONE :: 30 starting structures 10717 cpu seconds This process generated 30 decoys from 30 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2011- 1-19 14: 5: 1:] :: BOINC:: Initializing ... ok. [2011- 1-19 14: 5: 1:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Starting work on structure: _00002 Starting work on structure: _00003 Starting work on structure: _00004 Starting work on structure: _00005 Starting work on structure: _00006 Starting work on structure: _00007 Starting work on structure: _00008 Starting work on structure: _00009 Starting work on structure: _00010 Starting work on structure: _00011 Starting work on structure: _00012 Starting work on structure: _00013 Starting work on structure: _00014 Starting work on structure: _00015 Starting work on structure: _00016 Starting work on structure: _00017 Starting work on structure: _00018 Starting work on structure: _00019 Starting work on structure: _00020 Starting work on structure: _00021 Starting work on structure: _00022 Starting work on structure: _00023 Starting work on structure: _00024 Starting work on structure: _00025 Starting work on structure: _00026 Starting work on structure: _00027 Starting work on structure: _00028 Starting work on structure: _00029 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1-20 3:51:10:] :: BOINC:: Initializing ... ok. [2011- 1-20 3:51:10:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00029 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1-20 3:53:12:] :: BOINC:: Initializing ... ok. [2011- 1-20 3:53:12:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00029 Starting work on structure: _00030 Starting work on structure: _00031 Starting work on structure: _00032 Starting work on structure: _00033 Starting work on structure: _00034 Starting work on structure: _00035 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1-20 5: 7: 2:] :: BOINC:: Initializing ... ok. [2011- 1-20 5: 7: 2:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00035 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1-20 5: 8:53:] :: BOINC:: Initializing ... ok. [2011- 1-20 5: 8:53:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00035 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1-20 5:23: 4:] :: BOINC:: Initializing ... ok. [2011- 1-20 5:23: 4:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. ====================================================== DONE :: 1 starting structures 10629.1 cpu seconds This process generated 34 decoys from 34 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2011- 1-20 9:29:45:] :: BOINC:: Initializing ... ok. [2011- 1-20 9:29:45:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/redo_targets_calmodulin_control_files3.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. ====================================================== DONE :: 62 starting structures 10746.3 cpu seconds This process generated 62 decoys from 62 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2011- 1-20 12:30:23:] :: BOINC:: Initializing ... ok. [2011- 1-20 12:30:23:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/redo_targets_Ncalmodulin_pcs_files4.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. ====================================================== DONE :: 76 starting structures 10762.6 cpu seconds This process generated 76 decoys from 76 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2011- 1-20 15:31: 5:] :: BOINC:: Initializing ... ok. [2011- 1-20 15:31: 5:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/med_targets_2KLB_pcs_med_files1.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1-24 4: 2:14:] :: BOINC:: Initializing ... ok. [2011- 1-24 4: 2:14:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/med_targets_2KLB_pcs_med_files1.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00009_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00009_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00009_FragmentSampler__stage3 ... success! Continuing computation from checkpoint: chk_S_00009_FragmentSampler__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00009_FragmentSampler__stage4_kk_2 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1-24 4:48:27:] :: BOINC:: Initializing ... ok. [2011- 1-24 4:48:27:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/med_targets_2KLB_pcs_med_files1.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00013_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00013_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00013_FragmentSampler__stage3 ... success! Continuing computation from checkpoint: chk_S_00013_FragmentSampler__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00013_FragmentSampler__stage4_kk_2 ... success! Continuing computation from checkpoint: chk_S_00013_FragmentSampler__stage4_kk_3 ... success! ====================================================== DONE :: 14 starting structures 5682.73 cpu seconds This process generated 14 decoys from 14 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.6 build 10J567 Mon Jan 24 11:26:09 2011 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x919f846b 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x919920fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec ss: 0x0000001f efl: 0x00000206 eip: 0x919920fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_wtws_1799_200_007115683/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_wtws_1799_200_007115683/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_wtws_1799_200_007115683/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_wtws_1799_200_007115683/lib/libirc.dylib 0x91991000 - 0x91b38fff /usr/lib/libSystem.B.dylib 0x98854000 - 0x98862fff /usr/lib/libz.1.dylib 0x99107000 - 0x9910afff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=13848, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... Model crashed: ATM_DYN : INVALID THETA DETECTED. tmp/pipe_dummy CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.6 build 10J567 Sun Jan 30 09:43:36 2011 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x919f846b 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x919920fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec ss: 0x0000001f efl: 0x00000206 eip: 0x919920fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_wtws_1799_200_007115683/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_wtws_1799_200_007115683/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_wtws_1799_200_007115683/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_wtws_1799_200_007115683/lib/libirc.dylib 0x91991000 - 0x91b38fff /usr/lib/libSystem.B.dylib 0x98854000 - 0x98862fff /usr/lib/libz.1.dylib 0x99107000 - 0x9910afff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=1475, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.6 build 10J567 Sun Jan 30 10:21:47 2011 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x919f846b 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x003f5826 7 0x00450bd8 8 0x004698c0 9 0x000026b6 10 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffd47c edx: 0x919920fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffd4b8 esp: 0xbfffd47c ss: 0x0000001f efl: 0x00000206 eip: 0x919920fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_wtws_1799_200_007115683/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_wtws_1799_200_007115683/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_wtws_1799_200_007115683/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_wtws_1799_200_007115683/lib/libirc.dylib 0x91991000 - 0x91b38fff /usr/lib/libSystem.B.dylib 0x98854000 - 0x98862fff /usr/lib/libz.1.dylib 0x99107000 - 0x9910afff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=2235, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.6 build 10J567 Tue Feb 1 10:42:21 2011 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x919f846b 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x003f5826 7 0x00450bd8 8 0x004698c0 9 0x000026b6 10 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffd47c edx: 0x919920fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffd4b8 esp: 0xbfffd47c ss: 0x0000001f efl: 0x00000206 eip: 0x919920fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_wtws_1799_200_007115683/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_wtws_1799_200_007115683/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_wtws_1799_200_007115683/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_wtws_1799_200_007115683/lib/libirc.dylib 0x91991000 - 0x91b38fff /usr/lib/libSystem.B.dylib 0x98854000 - 0x98862fff /usr/lib/libz.1.dylib 0x99107000 - 0x9910afff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=54695, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.6 build 10J567 Wed Feb 2 18:44:43 2011 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x919f846b 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x919920fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec ss: 0x0000001f efl: 0x00000206 eip: 0x919920fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_wtws_1799_200_007115683/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_wtws_1799_200_007115683/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_wtws_1799_200_007115683/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_wtws_1799_200_007115683/lib/libirc.dylib 0x91991000 - 0x91b38fff /usr/lib/libSystem.B.dylib 0x98854000 - 0x98862fff /usr/lib/libz.1.dylib 0x99107000 - 0x9910afff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=8046, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... Signal 3 received, exiting... (1034): called boinc_finish </stderr_txt> ]]>

Latest Trickles Received
Time Sent (UTC)	Host ID	Result ID	Result Name	Timestep	CPU Time (sec)	Average (sec/TS)
03 Feb 2011 15:20:19	844607	12516576	famous_wtws_1799_200_007115683_1	851,786	144,477	0.1696
03 Feb 2011 15:20:19	844607	12516576	famous_wtws_1799_200_007115683_1	842,426	142,881	0.1696
03 Feb 2011 15:20:19	844607	12516576	famous_wtws_1799_200_007115683_1	833,066	141,297	0.1696
03 Feb 2011 15:20:19	844607	12516576	famous_wtws_1799_200_007115683_1	823,706	139,737	0.1696
03 Feb 2011 15:20:19	844607	12516576	famous_wtws_1799_200_007115683_1	814,346	138,153	0.1696
03 Feb 2011 15:20:19	844607	12516576	famous_wtws_1799_200_007115683_1	804,986	136,568	0.1697
03 Feb 2011 15:20:19	844607	12516576	famous_wtws_1799_200_007115683_1	795,626	134,980	0.1697
03 Feb 2011 15:20:19	844607	12516576	famous_wtws_1799_200_007115683_1	786,266	133,396	0.1697
03 Feb 2011 15:20:19	844607	12516576	famous_wtws_1799_200_007115683_1	776,906	131,832	0.1697
02 Feb 2011 10:22:23	844607	12516576	famous_wtws_1799_200_007115683_1	767,546	130,251	0.1697
02 Feb 2011 09:46:16	844607	12516576	famous_wtws_1799_200_007115683_1	758,186	128,636	0.1697
02 Feb 2011 09:15:24	844607	12516576	famous_wtws_1799_200_007115683_1	748,826	127,037	0.1696
02 Feb 2011 08:49:36	844607	12516576	famous_wtws_1799_200_007115683_1	739,466	125,424	0.1696
02 Feb 2011 08:44:29	844607	12516576	famous_wtws_1799_200_007115683_1	730,106	123,824	0.1696
02 Feb 2011 07:57:54	844607	12516576	famous_wtws_1799_200_007115683_1	720,746	122,239	0.1696
02 Feb 2011 07:32:05	844607	12516576	famous_wtws_1799_200_007115683_1	711,386	120,651	0.1696
02 Feb 2011 07:06:07	844607	12516576	famous_wtws_1799_200_007115683_1	702,026	119,041	0.1696
02 Feb 2011 06:40:07	844607	12516576	famous_wtws_1799_200_007115683_1	692,666	117,433	0.1695
02 Feb 2011 06:14:39	844607	12516576	famous_wtws_1799_200_007115683_1	683,306	115,827	0.1695
02 Feb 2011 05:47:24	844607	12516576	famous_wtws_1799_200_007115683_1	673,946	114,234	0.1695