 |
|
| Name | famous_wtu8_599_200_007113175_0 |
| Workunit | 7312032 |
| Created | 16 Jan 2011, 14:47:40 UTC |
| Sent | 20 Jan 2011, 7:28:16 UTC |
| Report deadline | 21 Apr 2011, 14:55:27 UTC |
| Received | 25 Jan 2011, 14:23:12 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 193 (0x000000C1) EXIT_SIGNAL |
| Computer ID | 844607 |
| Run time | 11 hours 3 min 45 sec |
| CPU time | 10 hours 40 min 48 sec |
| Validate state | Invalid |
| Credit | 710.36 |
| Device peak FLOPS | 3.44 GFLOPS |
| Application version | UK Met Office FAMOUS v6.11 i686-apple-darwin |
| Stderr | <core_client_version>6.10.17</core_client_version> <![CDATA[ <message> process exited with code 193 (0xc1, -63) </message> <stderr_txt> ntSampler__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_9 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010-12-29 1: 3: 9:] :: BOINC:: Initializing ... ok. [2010-12-29 1: 3: 9:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_006016_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage3 ... success! Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage4_kk_1 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010-12-29 1:52: 1:] :: BOINC:: Initializing ... ok. [2010-12-29 1:52: 1:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_006016_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage_3_iter1_8 ... success! ====================================================== DONE :: 8 starting structures 6916.29 cpu seconds This process generated 8 decoys from 8 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010-12-29 4:45: 7:] :: BOINC:: Initializing ... ok. [2010-12-29 4:45: 7:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_009364_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0227_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010-12-29 5:37: 4:] :: BOINC:: Initializing ... ok. [2010-12-29 5:37: 4:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_009364_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0227_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00003_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00003_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00003_FragmentSampler__stage_3_iter1_1 ... success! ====================================================== DONE :: 4 starting structures 5484.39 cpu seconds This process generated 4 decoys from 4 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010-12-29 6:46: 0:] :: BOINC:: Initializing ... ok. [2010-12-29 6:46: 0:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_006799_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0071_0184_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010-12-31 0:57: 8:] :: BOINC:: Initializing ... ok. [2010-12-31 0:57: 8:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_006799_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0071_0184_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_3 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010-12-31 3:42:47:] :: BOINC:: Initializing ... ok. [2010-12-31 3:42:47:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_006799_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0071_0184_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_3 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010-12-31 3:44:10:] :: BOINC:: Initializing ... ok. [2010-12-31 3:44:10:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_006799_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0071_0184_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_3 ... success! ====================================================== DONE :: 13 starting structures 9954.05 cpu seconds This process generated 13 decoys from 13 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010-12-31 20:53:44:] :: BOINC:: Initializing ... ok. [2010-12-31 20:53:44:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_003850_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 1 1:45:45:] :: BOINC:: Initializing ... ok. [2011- 1- 1 1:45:45:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_003850_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 1 3:48:53:] :: BOINC:: Initializing ... ok. [2011- 1- 1 3:48:53:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_003850_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_8 ... success! ====================================================== DONE :: 10 starting structures 9672.92 cpu seconds This process generated 10 decoys from 10 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2011- 1- 1 6:23: 2:] :: BOINC:: Initializing ... ok. [2011- 1- 1 6:23: 2:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_000685_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. ====================================================== DONE :: 11 starting structures 9982.96 cpu seconds This process generated 11 decoys from 11 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2011- 1- 1 10:12:10:] :: BOINC:: Initializing ... ok. [2011- 1- 1 10:12:10:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_005408_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 1 13:23:28:] :: BOINC:: Initializing ... ok. [2011- 1- 1 13:23:28:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_005408_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... [2011- 1- 1 21: 7:17:] :: BOINC:: Initializing ... ok. [2011- 1- 1 21: 7:17:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_005408_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage3 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage4_kk_1 ... success! [2011- 1- 1 21:19:16:] :: BOINC:: Initializing ... ok. [2011- 1- 1 21:19:16:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_005408_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage3 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage4_kk_1 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 4 0:49:21:] :: BOINC:: Initializing ... ok. [2011- 1- 4 0:49:21:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_005408_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_1 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 4 2:14:52:] :: BOINC:: Initializing ... ok. [2011- 1- 4 2:14:52:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_005408_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage3 ... success! Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage4_kk_2 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 4 3:22: 9:] :: BOINC:: Initializing ... ok. [2011- 1- 4 3:22: 9:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_005408_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00008_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00008_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00008_FragmentSampler__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00008_FragmentSampler__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00008_FragmentSampler__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00008_FragmentSampler__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00008_FragmentSampler__stage_3_iter1_5 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 4 4:44:57:] :: BOINC:: Initializing ... ok. [2011- 1- 4 4:44:57:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_005408_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00009_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00009_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00009_FragmentSampler__stage3 ... success! Continuing computation from checkpoint: chk_S_00009_FragmentSampler__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00009_FragmentSampler__stage4_kk_2 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 4 5:46:22:] :: BOINC:: Initializing ... ok. [2011- 1- 4 5:46:22:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_005408_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00009_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00009_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00009_FragmentSampler__stage3 ... success! Continuing computation from checkpoint: chk_S_00009_FragmentSampler__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00009_FragmentSampler__stage4_kk_2 ... success! Continuing computation from checkpoint: chk_S_00009_FastRelax__chk1_fa ... success! Continuing computation from checkpoint: chk_S_00009_FastRelax__chk2_fa ... success! Continuing computation from checkpoint: chk_S_00009_FastRelax__chk3_fa ... success! Continuing computation from checkpoint: chk_S_00009_FastRelax__chk4_fa ... success! Continuing computation from checkpoint: chk_S_00009_FastRelax__chk5_fa ... success! Continuing computation from checkpoint: chk_S_00009_FastRelax__chk6_fa ... success! Continuing computation from checkpoint: chk_S_00009_FastRelax__chk7_fa ... success! Continuing computation from checkpoint: chk_S_00009_FastRelax__chk8_fa ... success! Continuing computation from checkpoint: chk_S_00009_FastRelax__chk9_fa ... success! Continuing computation from checkpoint: chk_S_00009_FastRelax__chk10_fa ... success! ====================================================== DONE :: 10 starting structures 8566.92 cpu seconds This process generated 10 decoys from 10 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2011- 1- 5 16: 3:51:] :: BOINC:: Initializing ... ok. [2011- 1- 5 16: 3:51:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/t462__boinc_nmr_cm_rnd1_loopbuild_threading_cst_relax_tex.boinc.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 5 17:26:44:] :: BOINC:: Initializing ... ok. [2011- 1- 5 17:26:44:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/t462__boinc_nmr_cm_rnd1_loopbuild_threading_cst_relax_tex.boinc.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... [2011- 1- 5 17:28:22:] :: BOINC:: Initializing ... ok. [2011- 1- 5 17:28:22:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/t462__boinc_nmr_cm_rnd1_loopbuild_threading_cst_relax_tex.boinc.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. ====================================================== DONE :: 21 starting structures 10234.6 cpu seconds This process generated 21 decoys from 21 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... Signal 3 received, exiting... (1030): called boinc_finish [2011- 1-17 9:29:52:] :: BOINC:: Initializing ... ok. [2011- 1-17 9:29:52:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prog_run05_centroid_round01_F_subrun_000002_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prog_run05_centroid_round01_F_input_1sor_0027_0067_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1-17 11: 5:33:] :: BOINC:: Initializing ... ok. [2011- 1-17 11: 5:33:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prog_run05_centroid_round01_F_subrun_000002_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prog_run05_centroid_round01_F_input_1sor_0027_0067_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. ====================================================== DONE :: 135 starting structures 9627.16 cpu seconds This process generated 135 decoys from 135 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2011- 1-17 14: 9:14:] :: BOINC:: Initializing ... ok. [2011- 1-17 14: 9:14:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/new_targets_1F21_pcs_files4.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. ====================================================== DONE :: 16 starting structures 10439.2 cpu seconds This process generated 16 decoys from 16 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2011- 1-17 17:10: 4:] :: BOINC:: Initializing ... ok. [2011- 1-17 17:10: 4:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prog_run05_centroid_round01_F_subrun_000014_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prog_run05_centroid_round01_F_input_1sor_0071_0184_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1-17 23:32:29:] :: BOINC:: Initializing ... ok. [2011- 1-17 23:32:29:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prog_run05_centroid_round01_F_subrun_000014_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prog_run05_centroid_round01_F_input_1sor_0071_0184_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1-19 10: 2:40:] :: BOINC:: Initializing ... ok. [2011- 1-19 10: 2:40:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prog_run05_centroid_round01_F_subrun_000014_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prog_run05_centroid_round01_F_input_1sor_0071_0184_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00073_FragmentSampler__rg_state ... success! Continuing computation from checkpoint: chk_S_00073_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00073_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00073_FragmentSampler__stage3 ... success! Continuing computation from checkpoint: chk_S_00073_FragmentSampler__stage4_kk_1 ... success! ====================================================== DONE :: 74 starting structures 10387 cpu seconds This process generated 74 decoys from 74 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2011- 1-19 11:14: 0:] :: BOINC:: Initializing ... ok. [2011- 1-19 11:14: 0:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Starting work on structure: _00002 Starting work on structure: _00003 Starting work on structure: _00004 Starting work on structure: _00005 Starting work on structure: _00006 Starting work on structure: _00007 Starting work on structure: _00008 Starting work on structure: _00009 Starting work on structure: _00010 Starting work on structure: _00011 Starting work on structure: _00012 Starting work on structure: _00013 Starting work on structure: _00014 Starting work on structure: _00015 Starting work on structure: _00016 Starting work on structure: _00017 Starting work on structure: _00018 Starting work on structure: _00019 Starting work on structure: _00020 Starting work on structure: _00021 Starting work on structure: _00022 Starting work on structure: _00023 Starting work on structure: _00024 Starting work on structure: _00025 ====================================================== DONE :: 1 starting structures 10798.1 cpu seconds This process generated 25 decoys from 25 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2011- 1-19 14:17:37:] :: BOINC:: Initializing ... ok. [2011- 1-19 14:17:37:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/old_targets_myoglobin_control_files3.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1-20 3:51:13:] :: BOINC:: Initializing ... ok. [2011- 1-20 3:51:13:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/old_targets_myoglobin_control_files3.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00045_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00045_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00045_FragmentSampler__stage3 ... success! Continuing computation from checkpoint: chk_S_00045_FragmentSampler__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00045_FragmentSampler__stage4_kk_2 ... success! Continuing computation from checkpoint: chk_S_00045_FragmentSampler__stage4_kk_3 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1-20 3:53:12:] :: BOINC:: Initializing ... ok. [2011- 1-20 3:53:12:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/old_targets_myoglobin_control_files3.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00045_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00045_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00045_FragmentSampler__stage3 ... success! Continuing computation from checkpoint: chk_S_00045_FragmentSampler__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00045_FragmentSampler__stage4_kk_2 ... success! Continuing computation from checkpoint: chk_S_00045_FragmentSampler__stage4_kk_3 ... success! ====================================================== DONE :: 46 starting structures 8237.91 cpu seconds This process generated 46 decoys from 46 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2011- 1-20 4: 0:52:] :: BOINC:: Initializing ... ok. [2011- 1-20 4: 0:52:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/new_targets_1JW3_pcs_files4.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1-20 5: 7: 4:] :: BOINC:: Initializing ... ok. [2011- 1-20 5: 7: 4:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/new_targets_1JW3_pcs_files4.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00003_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00003_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00003_FragmentSampler__stage3 ... success! Continuing computation from checkpoint: chk_S_00003_FragmentSampler__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00003_FragmentSampler__stage4_kk_2 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1-20 5: 8:54:] :: BOINC:: Initializing ... ok. [2011- 1-20 5: 8:54:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip [2011- 1-20 5:23:38:] :: BOINC:: Initializing ... ok. [2011- 1-20 5:23:39:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/new_targets_1JW3_pcs_files4.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00003_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00003_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00003_FragmentSampler__stage3 ... success! Continuing computation from checkpoint: chk_S_00003_FragmentSampler__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00003_FragmentSampler__stage4_kk_2 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1-20 7:29:20:] :: BOINC:: Initializing ... ok. [2011- 1-20 7:29:20:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/new_targets_1JW3_pcs_files4.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage3 ... success! Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage4_kk_1 ... success! ====================================================== DONE :: 20 starting structures 10368.3 cpu seconds This process generated 20 decoys from 20 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... Signal 3 received, exiting... (1022): called boinc_finish </stderr_txt> ]]> |
| Latest Trickles Received | ||||||
|---|---|---|---|---|---|---|
| Time Sent (UTC) | Host ID | Result ID | Result Name | Timestep | CPU Time (sec) | Average (sec/TS) |
| 24 Jan 2011 09:35:06 | 844607 | 12488097 | famous_wtu8_599_200_007113175_0 | 215,306 | 38,448 | 0.1786 |
| 24 Jan 2011 09:09:03 | 844607 | 12488097 | famous_wtu8_599_200_007113175_0 | 205,946 | 36,817 | 0.1788 |
| 24 Jan 2011 08:27:40 | 844607 | 12488097 | famous_wtu8_599_200_007113175_0 | 196,586 | 35,190 | 0.1790 |
| 24 Jan 2011 08:01:20 | 844607 | 12488097 | famous_wtu8_599_200_007113175_0 | 187,226 | 33,574 | 0.1793 |
| 24 Jan 2011 07:35:20 | 844607 | 12488097 | famous_wtu8_599_200_007113175_0 | 177,866 | 31,957 | 0.1797 |
| 24 Jan 2011 07:09:28 | 844607 | 12488097 | famous_wtu8_599_200_007113175_0 | 168,506 | 30,341 | 0.1801 |
| 24 Jan 2011 06:38:29 | 844607 | 12488097 | famous_wtu8_599_200_007113175_0 | 159,146 | 28,724 | 0.1805 |
| 24 Jan 2011 06:12:32 | 844607 | 12488097 | famous_wtu8_599_200_007113175_0 | 149,786 | 27,108 | 0.1810 |
| 24 Jan 2011 05:46:25 | 844607 | 12488097 | famous_wtu8_599_200_007113175_0 | 140,426 | 25,492 | 0.1815 |
| 24 Jan 2011 03:26:07 | 844607 | 12488097 | famous_wtu8_599_200_007113175_0 | 131,066 | 23,855 | 0.1820 |
| 24 Jan 2011 02:55:13 | 844607 | 12488097 | famous_wtu8_599_200_007113175_0 | 121,706 | 22,144 | 0.1819 |
| 24 Jan 2011 02:29:17 | 844607 | 12488097 | famous_wtu8_599_200_007113175_0 | 112,346 | 20,435 | 0.1819 |
| 24 Jan 2011 01:53:17 | 844607 | 12488097 | famous_wtu8_599_200_007113175_0 | 102,986 | 18,652 | 0.1811 |
| 24 Jan 2011 01:22:12 | 844607 | 12488097 | famous_wtu8_599_200_007113175_0 | 93,626 | 16,883 | 0.1803 |
| 24 Jan 2011 00:45:58 | 844607 | 12488097 | famous_wtu8_599_200_007113175_0 | 84,266 | 15,017 | 0.1782 |
| 24 Jan 2011 00:09:47 | 844607 | 12488097 | famous_wtu8_599_200_007113175_0 | 74,906 | 13,189 | 0.1761 |
| 23 Jan 2011 23:43:42 | 844607 | 12488097 | famous_wtu8_599_200_007113175_0 | 65,546 | 11,499 | 0.1754 |
| 23 Jan 2011 23:12:35 | 844607 | 12488097 | famous_wtu8_599_200_007113175_0 | 56,186 | 9,862 | 0.1755 |
| 23 Jan 2011 22:46:05 | 844607 | 12488097 | famous_wtu8_599_200_007113175_0 | 46,826 | 8,226 | 0.1757 |
| 23 Jan 2011 22:19:25 | 844607 | 12488097 | famous_wtu8_599_200_007113175_0 | 37,466 | 6,591 | 0.1759 |
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