<core_client_version>6.10.17</core_client_version>
<![CDATA[
<message>
process exited with code 193 (0xc1, -63)
</message>
<stderr_txt>
ces shutting down cleanly ...
called boinc_finish
CPDN Monitor - Quit request from BOINC...
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MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
MainError: 08:27:44 PM No files match the supplied pattern.
CPDN Monitor - Quit request from BOINC...
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No heartbeat from core client for 30 sec - exiting
CPDN Monitor - No 'heartbeat' from BOINC...
No heartbeat from core client for 30 sec - exiting
No heartbeat from core client for 30 sec - exiting
No heartbeat from core client for 30 sec - exiting
No heartbeat from core client for 30 sec - exiting
No heartbeat from core client for 30 sec - exiting
No heartbeat from core client for 30 sec - exiting
No heartbeat from core client for 30 sec - exiting
No heartbeat from core client for 30 sec - exiting
No heartbeat from core client for 30 sec - exiting
No heartbeat from core client for 30 sec - exiting
No heartbeat from core client for 30 sec - exiting
No heartbeat from core client for 30 sec - exiting
No heartbeat from core client for 30 sec - exiting
No heartbeat from core client for 30 sec - exiting
No heartbeat from core client for 30 sec - exiting
No heartbeat from core client for 30 sec - exiting
No heartbeat from core client for 30 sec - exiting
No heartbeat from core client for 30 sec - exiting
No heartbeat from core client for 30 sec - exiting
No heartbeat from core client for 30 sec - exiting
No heartbeat from core client for 30 sec - exiting
No heartbeat from core client for 30 sec - exiting
No heartbeat from core client for 30 sec - exiting
CPDN Monitor - Quit request from BOINC...
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MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
MainError: 06:45:27 PM No files match the supplied pattern.
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
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CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
No heartbeat from core client for 30 sec - exiting
CPDN Monitor - No 'heartbeat' from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
MainError: 12:38:04 AM No files match the supplied pattern.
called boinc_finish
[2010-12-28 22:44:45:] :: BOINC:: Initializing ... ok.
[2010-12-28 22:44:45:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_006016_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010-12-28 23:46:18:] :: BOINC:: Initializing ... ok.
[2010-12-28 23:46:18:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_006016_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_7 ... success!
Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_8 ... success!
Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_9 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010-12-29 1: 3: 9:] :: BOINC:: Initializing ... ok.
[2010-12-29 1: 3: 9:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_006016_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage3 ... success!
Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage4_kk_1 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010-12-29 1:52: 1:] :: BOINC:: Initializing ... ok.
[2010-12-29 1:52: 1:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_006016_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage_3_iter1_7 ... success!
Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage_3_iter1_8 ... success!
======================================================
DONE :: 8 starting structures 6916.29 cpu seconds
This process generated 8 decoys from 8 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010-12-29 4:45: 7:] :: BOINC:: Initializing ... ok.
[2010-12-29 4:45: 7:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_009364_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0227_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010-12-29 5:37: 4:] :: BOINC:: Initializing ... ok.
[2010-12-29 5:37: 4:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_009364_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0227_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00003_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00003_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00003_FragmentSampler__stage_3_iter1_1 ... success!
======================================================
DONE :: 4 starting structures 5484.39 cpu seconds
This process generated 4 decoys from 4 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010-12-29 6:46: 0:] :: BOINC:: Initializing ... ok.
[2010-12-29 6:46: 0:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_006799_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0071_0184_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010-12-31 0:57: 8:] :: BOINC:: Initializing ... ok.
[2010-12-31 0:57: 8:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_006799_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0071_0184_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_3 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010-12-31 3:42:47:] :: BOINC:: Initializing ... ok.
[2010-12-31 3:42:47:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_006799_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0071_0184_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_3 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010-12-31 3:44:10:] :: BOINC:: Initializing ... ok.
[2010-12-31 3:44:10:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_006799_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0071_0184_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_3 ... success!
======================================================
DONE :: 13 starting structures 9954.05 cpu seconds
This process generated 13 decoys from 13 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010-12-31 20:53:44:] :: BOINC:: Initializing ... ok.
[2010-12-31 20:53:44:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_003850_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2011- 1- 1 1:45:45:] :: BOINC:: Initializing ... ok.
[2011- 1- 1 1:45:45:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_003850_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2011- 1- 1 3:48:53:] :: BOINC:: Initializing ... ok.
[2011- 1- 1 3:48:53:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_003850_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_7 ... success!
Continuing computation from checkpoint: chk_S_00004_FragmentSampler__stage_3_iter1_8 ... success!
======================================================
DONE :: 10 starting structures 9672.92 cpu seconds
This process generated 10 decoys from 10 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2011- 1- 1 6:23: 2:] :: BOINC:: Initializing ... ok.
[2011- 1- 1 6:23: 2:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_000685_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
======================================================
DONE :: 11 starting structures 9982.96 cpu seconds
This process generated 11 decoys from 11 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2011- 1- 1 10:12:10:] :: BOINC:: Initializing ... ok.
[2011- 1- 1 10:12:10:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_005408_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2011- 1- 1 13:23:28:] :: BOINC:: Initializing ... ok.
[2011- 1- 1 13:23:28:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_005408_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
[2011- 1- 1 21: 7:17:] :: BOINC:: Initializing ... ok.
[2011- 1- 1 21: 7:17:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_005408_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage3 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage4_kk_1 ... success!
[2011- 1- 1 21:19:16:] :: BOINC:: Initializing ... ok.
[2011- 1- 1 21:19:16:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_005408_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage3 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage4_kk_1 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2011- 1- 4 0:49:21:] :: BOINC:: Initializing ... ok.
[2011- 1- 4 0:49:21:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_005408_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_1 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2011- 1- 4 2:14:52:] :: BOINC:: Initializing ... ok.
[2011- 1- 4 2:14:52:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_005408_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage3 ... success!
Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage4_kk_1 ... success!
Continuing computation from checkpoint: chk_S_00007_FragmentSampler__stage4_kk_2 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2011- 1- 4 3:22: 9:] :: BOINC:: Initializing ... ok.
[2011- 1- 4 3:22: 9:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_005408_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00008_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00008_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00008_FragmentSampler__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00008_FragmentSampler__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00008_FragmentSampler__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00008_FragmentSampler__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00008_FragmentSampler__stage_3_iter1_5 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2011- 1- 4 4:44:57:] :: BOINC:: Initializing ... ok.
[2011- 1- 4 4:44:57:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_005408_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00009_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00009_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00009_FragmentSampler__stage3 ... success!
Continuing computation from checkpoint: chk_S_00009_FragmentSampler__stage4_kk_1 ... success!
Continuing computation from checkpoint: chk_S_00009_FragmentSampler__stage4_kk_2 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2011- 1- 4 5:46:22:] :: BOINC:: Initializing ... ok.
[2011- 1- 4 5:46:22:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_005408_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00009_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00009_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00009_FragmentSampler__stage3 ... success!
Continuing computation from checkpoint: chk_S_00009_FragmentSampler__stage4_kk_1 ... success!
Continuing computation from checkpoint: chk_S_00009_FragmentSampler__stage4_kk_2 ... success!
Continuing computation from checkpoint: chk_S_00009_FastRelax__chk1_fa ... success!
Continuing computation from checkpoint: chk_S_00009_FastRelax__chk2_fa ... success!
Continuing computation from checkpoint: chk_S_00009_FastRelax__chk3_fa ... success!
Continuing computation from checkpoint: chk_S_00009_FastRelax__chk4_fa ... success!
Continuing computation from checkpoint: chk_S_00009_FastRelax__chk5_fa ... success!
Continuing computation from checkpoint: chk_S_00009_FastRelax__chk6_fa ... success!
Continuing computation from checkpoint: chk_S_00009_FastRelax__chk7_fa ... success!
Continuing computation from checkpoint: chk_S_00009_FastRelax__chk8_fa ... success!
Continuing computation from checkpoint: chk_S_00009_FastRelax__chk9_fa ... success!
Continuing computation from checkpoint: chk_S_00009_FastRelax__chk10_fa ... success!
======================================================
DONE :: 10 starting structures 8566.92 cpu seconds
This process generated 10 decoys from 10 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2011- 1- 5 16: 3:51:] :: BOINC:: Initializing ... ok.
[2011- 1- 5 16: 3:51:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/t462__boinc_nmr_cm_rnd1_loopbuild_threading_cst_relax_tex.boinc.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2011- 1- 5 17:26:44:] :: BOINC:: Initializing ... ok.
[2011- 1- 5 17:26:44:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/t462__boinc_nmr_cm_rnd1_loopbuild_threading_cst_relax_tex.boinc.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
[2011- 1- 5 17:28:22:] :: BOINC:: Initializing ... ok.
[2011- 1- 5 17:28:22:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/t462__boinc_nmr_cm_rnd1_loopbuild_threading_cst_relax_tex.boinc.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
======================================================
DONE :: 21 starting structures 10234.6 cpu seconds
This process generated 21 decoys from 21 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
Signal 3 received, exiting...
(1030): called boinc_finish
</stderr_txt>
]]>
