 |
|
| Name | famous_x5l5_1499_200_007069072_1 |
| Workunit | 7272372 |
| Created | 6 Jan 2011, 10:29:55 UTC |
| Sent | 6 Jan 2011, 10:38:54 UTC |
| Report deadline | 7 Apr 2011, 18:06:05 UTC |
| Received | 7 Jan 2011, 21:27:33 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 193 (0x000000C1) EXIT_SIGNAL |
| Computer ID | 844607 |
| Run time | 9 hours 47 min 21 sec |
| CPU time | 9 hours 34 min 46 sec |
| Validate state | Invalid |
| Credit | 648.60 |
| Device peak FLOPS | 3.44 GFLOPS |
| Application version | UK Met Office FAMOUS v6.11 i686-apple-darwin |
| Stderr | <core_client_version>6.10.17</core_client_version>
<![CDATA[
<message>
process exited with code 193 (0xc1, -63)
</message>
<stderr_txt>
75 cpu seconds
This process generated 7 decoys from 7 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010-12-28 15: 9:39:] :: BOINC:: Initializing ... ok.
[2010-12-28 15: 9:39:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010-12-28 16:32: 4:] :: BOINC:: Initializing ... ok.
[2010-12-28 16:32: 4:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010-12-28 18:40:43:] :: BOINC:: Initializing ... ok.
[2010-12-28 18:40:43:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010-12-28 18:59: 7:] :: BOINC:: Initializing ... ok.
[2010-12-28 18:59: 7:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010-12-28 19: 4:50:] :: BOINC:: Initializing ... ok.
[2010-12-28 19: 4:50:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010-12-28 19:27:27:] :: BOINC:: Initializing ... ok.
[2010-12-28 19:27:27:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010-12-28 19:34:57:] :: BOINC:: Initializing ... ok.
[2010-12-28 19:34:57:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
[2010-12-28 19:35:30:] :: BOINC:: Initializing ... ok.
[2010-12-28 19:35:30:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
======================================================
DONE :: 919 starting structures 10796.6 cpu seconds
This process generated 919 decoys from 919 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010-12-28 22:39:11:] :: BOINC:: Initializing ... ok.
[2010-12-28 22:39:11:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_006020_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0027_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010-12-28 23:46:17:] :: BOINC:: Initializing ... ok.
[2010-12-28 23:46:17:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_006020_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0027_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_7 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_8 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_9 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010-12-29 0:29:47:] :: BOINC:: Initializing ... ok.
[2010-12-29 0:29:47:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_006020_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0027_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
[2010-12-29 0:42:16:] :: BOINC:: Initializing ... ok.
[2010-12-29 0:42:16:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_006020_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0027_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage3 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage4_kk_1 ... success!
======================================================
DONE :: 7 starting structures 5434.45 cpu seconds
This process generated 7 decoys from 7 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010-12-29 2:17: 6:] :: BOINC:: Initializing ... ok.
[2010-12-29 2:17: 6:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_009368_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0227_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010-12-29 3:41:16:] :: BOINC:: Initializing ... ok.
[2010-12-29 3:41:16:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_009368_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0227_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00002_FragmentSampler__stage1 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010-12-29 4:14: 0:] :: BOINC:: Initializing ... ok.
[2010-12-29 4:14: 0:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_009368_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0227_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00002_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00002_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00002_FragmentSampler__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00002_FragmentSampler__stage_3_iter1_2 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010-12-29 5:37: 4:] :: BOINC:: Initializing ... ok.
[2010-12-29 5:37: 4:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_009368_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0227_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_5 ... success!
======================================================
DONE :: 6 starting structures 8878.95 cpu seconds
This process generated 6 decoys from 6 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010-12-29 6:27: 6:] :: BOINC:: Initializing ... ok.
[2010-12-29 6:27: 6:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_008023_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010-12-31 0:57: 7:] :: BOINC:: Initializing ... ok.
[2010-12-31 0:57: 7:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_008023_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_5 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010-12-31 3:42:45:] :: BOINC:: Initializing ... ok.
[2010-12-31 3:42:45:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_008023_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_5 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010-12-31 3:44: 9:] :: BOINC:: Initializing ... ok.
[2010-12-31 3:44: 9:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_008023_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_5 ... success!
======================================================
DONE :: 6 starting structures 5921.87 cpu seconds
This process generated 6 decoys from 6 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010-12-31 7:40:49:] :: BOINC:: Initializing ... ok.
[2010-12-31 7:40:49:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_004349_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010-12-31 20:53:43:] :: BOINC:: Initializing ... ok.
[2010-12-31 20:53:43:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_004349_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010-12-31 20:58:21:] :: BOINC:: Initializing ... ok.
[2010-12-31 20:58:21:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
[2011- 1- 1 1:45:44:] :: BOINC:: Initializing ... ok.
[2011- 1- 1 1:45:44:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_004349_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2011- 1- 1 1:47:10:] :: BOINC:: Initializing ... ok.
[2011- 1- 1 1:47:10:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_004349_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2011- 1- 1 3:48:23:] :: BOINC:: Initializing ... ok.
[2011- 1- 1 3:48:23:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_004349_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_7 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_8 ... success!
======================================================
DONE :: 7 starting structures 6614.36 cpu seconds
This process generated 7 decoys from 7 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2011- 1- 1 5:51:14:] :: BOINC:: Initializing ... ok.
[2011- 1- 1 5:51:14:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_003983_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2011- 1- 1 8:23:54:] :: BOINC:: Initializing ... ok.
[2011- 1- 1 8:23:54:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_003983_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage3 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage4_kk_1 ... success!
======================================================
DONE :: 7 starting structures 6380.69 cpu seconds
This process generated 7 decoys from 7 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2011- 1- 1 10: 6:55:] :: BOINC:: Initializing ... ok.
[2011- 1- 1 10: 6:55:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_006185_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2011- 1- 1 13:23:27:] :: BOINC:: Initializing ... ok.
[2011- 1- 1 13:23:27:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_006185_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
[2011- 1- 1 21: 7:17:] :: BOINC:: Initializing ... ok.
[2011- 1- 1 21: 7:17:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_006185_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_2 ... success!
[2011- 1- 1 21:19:15:] :: BOINC:: Initializing ... ok.
[2011- 1- 1 21:19:15:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_006185_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_2 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2011- 1- 4 0:49:20:] :: BOINC:: Initializing ... ok.
[2011- 1- 4 0:49:20:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_006185_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_7 ... success!
Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_8 ... success!
======================================================
DONE :: 7 starting structures 6145.48 cpu seconds
This process generated 7 decoys from 7 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2011- 1- 4 1:12:15:] :: BOINC:: Initializing ... ok.
[2011- 1- 4 1:12:15:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_000788_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2011- 1- 4 2:14:53:] :: BOINC:: Initializing ... ok.
[2011- 1- 4 2:14:53:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_000788_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage_3_iter1_3 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2011- 1- 4 3:22: 9:] :: BOINC:: Initializing ... ok.
[2011- 1- 4 3:22: 9:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_000788_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage3 ... success!
Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage4_kk_1 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2011- 1- 4 4:44:58:] :: BOINC:: Initializing ... ok.
[2011- 1- 4 4:44:58:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_000788_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2011- 1- 4 5:46:23:] :: BOINC:: Initializing ... ok.
[2011- 1- 4 5:46:23:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_000788_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2011- 1- 5 15: 3:42:] :: BOINC:: Initializing ... ok.
[2011- 1- 5 15: 3:43:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_000788_yfsong.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage3 ... success!
Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage4_kk_1 ... success!
======================================================
DONE :: 6 starting structures 5418.79 cpu seconds
This process generated 6 decoys from 6 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2011- 1- 5 16: 3:49:] :: BOINC:: Initializing ... ok.
[2011- 1- 5 16: 3:49:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/t482__boinc_nmr_cm_rnd1_cs_frags_loopbuild_threading_tex.boinc.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2011- 1- 5 17:26:44:] :: BOINC:: Initializing ... ok.
[2011- 1- 5 17:26:44:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/t482__boinc_nmr_cm_rnd1_cs_frags_loopbuild_threading_tex.boinc.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
[2011- 1- 5 17:28:22:] :: BOINC:: Initializing ... ok.
[2011- 1- 5 17:28:22:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/t482__boinc_nmr_cm_rnd1_cs_frags_loopbuild_threading_tex.boinc.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
======================================================
DONE :: 20 starting structures 10377.3 cpu seconds
This process generated 20 decoys from 20 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
SIGSEGV: segmentation violation
Crashed executable name: famous_um_6.11_i686-apple-darwin
built using BOINC library version 6.11.1
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.6.5 build 10H574
Fri Jan 7 06:25:44 2011
sh: /usr/bin/atos: No such file or directory
0 0x0048fdcf 1 0x0049054a 2 0x95f5346b 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x003f5826 7 0x00450bd8 8 0x004698c0 9 0x000026b6 10 0x000025dd
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffd4bc edx: 0x95eed0fa
edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffd4f8 esp: 0xbfffd4bc
ss: 0x0000001f efl: 0x00000206 eip: 0x95eed0fa cs: 0x00000007
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037
Binary Images Description:
0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin
0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x5l5_1499_200_007069072/lib/libsvml.dylib
0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x5l5_1499_200_007069072/lib/libifcoremt.dylib
0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x5l5_1499_200_007069072/lib/libimf.dylib
0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x5l5_1499_200_007069072/lib/libirc.dylib
0x916ff000 - 0x9170dfff /usr/lib/libz.1.dylib
0x92896000 - 0x92899fff /usr/lib/system/libmathCommon.A.dylib
0x95eec000 - 0x96093fff /usr/lib/libSystem.B.dylib
Exiting...
Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=49151, iMonCtr=1
Model crash detected, will try to restart...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
Signal 3 received, exiting...
(1066): called boinc_finish
</stderr_txt>
]]>
|
| Latest Trickles Received | ||||||
|---|---|---|---|---|---|---|
| Time Sent (UTC) | Host ID | Result ID | Result Name | Timestep | CPU Time (sec) | Average (sec/TS) |
| 07 Jan 2011 21:31:43 | 844607 | 12465039 | famous_x5l5_1499_200_007069072_1 | 196,586 | 34,286 | 0.1744 |
| 07 Jan 2011 21:31:43 | 844607 | 12465039 | famous_x5l5_1499_200_007069072_1 | 187,226 | 32,669 | 0.1745 |
| 07 Jan 2011 21:31:43 | 844607 | 12465039 | famous_x5l5_1499_200_007069072_1 | 177,866 | 31,065 | 0.1747 |
| 07 Jan 2011 21:31:43 | 844607 | 12465039 | famous_x5l5_1499_200_007069072_1 | 168,506 | 29,462 | 0.1748 |
| 07 Jan 2011 21:31:43 | 844607 | 12465039 | famous_x5l5_1499_200_007069072_1 | 159,146 | 27,862 | 0.1751 |
| 07 Jan 2011 21:31:43 | 844607 | 12465039 | famous_x5l5_1499_200_007069072_1 | 149,786 | 26,259 | 0.1753 |
| 07 Jan 2011 21:31:43 | 844607 | 12465039 | famous_x5l5_1499_200_007069072_1 | 140,426 | 24,661 | 0.1756 |
| 07 Jan 2011 21:31:43 | 844607 | 12465039 | famous_x5l5_1499_200_007069072_1 | 131,066 | 23,063 | 0.1760 |
| 07 Jan 2011 21:31:43 | 844607 | 12465039 | famous_x5l5_1499_200_007069072_1 | 121,706 | 21,463 | 0.1764 |
| 07 Jan 2011 21:31:43 | 844607 | 12465039 | famous_x5l5_1499_200_007069072_1 | 112,346 | 19,862 | 0.1768 |
| 07 Jan 2011 21:31:43 | 844607 | 12465039 | famous_x5l5_1499_200_007069072_1 | 102,986 | 18,260 | 0.1773 |
| 07 Jan 2011 21:31:43 | 844607 | 12465039 | famous_x5l5_1499_200_007069072_1 | 93,626 | 16,661 | 0.1780 |
| 07 Jan 2011 21:31:43 | 844607 | 12465039 | famous_x5l5_1499_200_007069072_1 | 84,266 | 15,062 | 0.1787 |
| 07 Jan 2011 21:31:43 | 844607 | 12465039 | famous_x5l5_1499_200_007069072_1 | 74,906 | 13,462 | 0.1797 |
| 07 Jan 2011 00:57:18 | 844607 | 12465039 | famous_x5l5_1499_200_007069072_1 | 65,546 | 11,861 | 0.1810 |
| 07 Jan 2011 00:31:06 | 844607 | 12465039 | famous_x5l5_1499_200_007069072_1 | 56,186 | 10,262 | 0.1826 |
| 07 Jan 2011 00:04:33 | 844607 | 12465039 | famous_x5l5_1499_200_007069072_1 | 46,826 | 8,643 | 0.1846 |
| 06 Jan 2011 23:32:32 | 844607 | 12465039 | famous_x5l5_1499_200_007069072_1 | 37,466 | 6,919 | 0.1847 |
| 06 Jan 2011 23:00:05 | 844607 | 12465039 | famous_x5l5_1499_200_007069072_1 | 28,106 | 5,195 | 0.1848 |
| 06 Jan 2011 22:31:32 | 844607 | 12465039 | famous_x5l5_1499_200_007069072_1 | 18,746 | 3,460 | 0.1846 |
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