Task 12398974

Name	famous_x4gq_1599_200_007067617_0
Workunit	7270917
Created	18 Dec 2010, 13:05:50 UTC
Sent	6 Jan 2011, 22:24:15 UTC
Report deadline	8 Apr 2011, 5:51:26 UTC
Received	19 Jan 2011, 18:51:25 UTC
Server state	Over
Outcome	Computation error
Client state	Compute error
Exit status	193 (0x000000C1) EXIT_SIGNAL
Computer ID	844607
Run time	2 days 2 hours 58 min 21 sec
CPU time	2 days 1 hours 46 min 21 sec
Validate state	Invalid
Credit	3,366.18
Device peak FLOPS	3.44 GFLOPS
Application version	UK Met Office FAMOUS v6.11 i686-apple-darwin
Stderr	<core_client_version>6.10.17</core_client_version> <![CDATA[ <message> process exited with code 193 (0xc1, -63) </message> <stderr_txt> essed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_006020_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0027_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... [2010-12-29 0:42:16:] :: BOINC:: Initializing ... ok. [2010-12-29 0:42:16:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_006020_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0027_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage3 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage4_kk_1 ... success! ====================================================== DONE :: 7 starting structures 5434.45 cpu seconds This process generated 7 decoys from 7 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010-12-29 2:17: 6:] :: BOINC:: Initializing ... ok. [2010-12-29 2:17: 6:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_009368_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0227_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010-12-29 3:41:16:] :: BOINC:: Initializing ... ok. [2010-12-29 3:41:16:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_009368_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0227_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00002_FragmentSampler__stage1 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010-12-29 4:14: 0:] :: BOINC:: Initializing ... ok. [2010-12-29 4:14: 0:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_009368_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0227_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00002_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00002_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00002_FragmentSampler__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00002_FragmentSampler__stage_3_iter1_2 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010-12-29 5:37: 4:] :: BOINC:: Initializing ... ok. [2010-12-29 5:37: 4:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_009368_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0227_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_5 ... success! ====================================================== DONE :: 6 starting structures 8878.95 cpu seconds This process generated 6 decoys from 6 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010-12-29 6:27: 6:] :: BOINC:: Initializing ... ok. [2010-12-29 6:27: 6:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_008023_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010-12-31 0:57: 7:] :: BOINC:: Initializing ... ok. [2010-12-31 0:57: 7:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_008023_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_5 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010-12-31 3:42:45:] :: BOINC:: Initializing ... ok. [2010-12-31 3:42:45:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_008023_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_5 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010-12-31 3:44: 9:] :: BOINC:: Initializing ... ok. [2010-12-31 3:44: 9:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_subrun_008023_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prua_run05_centroid_round03_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage_3_iter1_5 ... success! ====================================================== DONE :: 6 starting structures 5921.87 cpu seconds This process generated 6 decoys from 6 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010-12-31 7:40:49:] :: BOINC:: Initializing ... ok. [2010-12-31 7:40:49:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_004349_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010-12-31 20:53:43:] :: BOINC:: Initializing ... ok. [2010-12-31 20:53:43:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_004349_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010-12-31 20:58:21:] :: BOINC:: Initializing ... ok. [2010-12-31 20:58:21:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip [2011- 1- 1 1:45:44:] :: BOINC:: Initializing ... ok. [2011- 1- 1 1:45:44:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_004349_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 1 1:47:10:] :: BOINC:: Initializing ... ok. [2011- 1- 1 1:47:10:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_004349_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 1 3:48:23:] :: BOINC:: Initializing ... ok. [2011- 1- 1 3:48:23:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_004349_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_8 ... success! ====================================================== DONE :: 7 starting structures 6614.36 cpu seconds This process generated 7 decoys from 7 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2011- 1- 1 5:51:14:] :: BOINC:: Initializing ... ok. [2011- 1- 1 5:51:14:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_003983_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 1 8:23:54:] :: BOINC:: Initializing ... ok. [2011- 1- 1 8:23:54:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_003983_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage3 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage4_kk_1 ... success! ====================================================== DONE :: 7 starting structures 6380.69 cpu seconds This process generated 7 decoys from 7 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2011- 1- 1 10: 6:55:] :: BOINC:: Initializing ... ok. [2011- 1- 1 10: 6:55:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_006185_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 1 13:23:27:] :: BOINC:: Initializing ... ok. [2011- 1- 1 13:23:27:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_006185_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... [2011- 1- 1 21: 7:17:] :: BOINC:: Initializing ... ok. [2011- 1- 1 21: 7:17:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_006185_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_2 ... success! [2011- 1- 1 21:19:15:] :: BOINC:: Initializing ... ok. [2011- 1- 1 21:19:15:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_006185_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_2 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 4 0:49:20:] :: BOINC:: Initializing ... ok. [2011- 1- 4 0:49:20:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_006185_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00006_FragmentSampler__stage_3_iter1_8 ... success! ====================================================== DONE :: 7 starting structures 6145.48 cpu seconds This process generated 7 decoys from 7 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2011- 1- 4 1:12:15:] :: BOINC:: Initializing ... ok. [2011- 1- 4 1:12:15:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_000788_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 4 2:14:53:] :: BOINC:: Initializing ... ok. [2011- 1- 4 2:14:53:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_000788_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage_3_iter1_3 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 4 3:22: 9:] :: BOINC:: Initializing ... ok. [2011- 1- 4 3:22: 9:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_000788_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage3 ... success! Continuing computation from checkpoint: chk_S_00001_FragmentSampler__stage4_kk_1 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 4 4:44:58:] :: BOINC:: Initializing ... ok. [2011- 1- 4 4:44:58:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_000788_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 4 5:46:23:] :: BOINC:: Initializing ... ok. [2011- 1- 4 5:46:23:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_000788_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 5 15: 3:42:] :: BOINC:: Initializing ... ok. [2011- 1- 5 15: 3:43:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_subrun_000788_yfsong.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/input_mem_prta_run05_centroid_round04_A_input_1sor_0001_0154_yfsong.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage1 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage2 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage3 ... success! Continuing computation from checkpoint: chk_S_00005_FragmentSampler__stage4_kk_1 ... success! ====================================================== DONE :: 6 starting structures 5418.79 cpu seconds This process generated 6 decoys from 6 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2011- 1- 5 16: 3:49:] :: BOINC:: Initializing ... ok. [2011- 1- 5 16: 3:49:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/t482__boinc_nmr_cm_rnd1_cs_frags_loopbuild_threading_tex.boinc.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2011- 1- 5 17:26:44:] :: BOINC:: Initializing ... ok. [2011- 1- 5 17:26:44:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/t482__boinc_nmr_cm_rnd1_cs_frags_loopbuild_threading_tex.boinc.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... [2011- 1- 5 17:28:22:] :: BOINC:: Initializing ... ok. [2011- 1- 5 17:28:22:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev39052.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/t482__boinc_nmr_cm_rnd1_cs_frags_loopbuild_threading_tex.boinc.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. ====================================================== DONE :: 20 starting structures 10377.3 cpu seconds This process generated 20 decoys from 20 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.5 build 10H574 Fri Jan 7 06:25:44 2011 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x95f5346b 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x003f5826 7 0x00450bd8 8 0x004698c0 9 0x000026b6 10 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffd4bc edx: 0x95eed0fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffd4f8 esp: 0xbfffd4bc ss: 0x0000001f efl: 0x00000206 eip: 0x95eed0fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x5l5_1499_200_007069072/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x5l5_1499_200_007069072/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x5l5_1499_200_007069072/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x5l5_1499_200_007069072/lib/libirc.dylib 0x916ff000 - 0x9170dfff /usr/lib/libz.1.dylib 0x92896000 - 0x92899fff /usr/lib/system/libmathCommon.A.dylib 0x95eec000 - 0x96093fff /usr/lib/libSystem.B.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=49151, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... Signal 3 received, exiting... (1066): called boinc_finish CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... BUFFIN: Read Failed: No such file or directory BUFFIN: C I/O Error feof - Unit 60 - Return code = 1 BUFFIN: Read Failed: No such file or directory BUFFIN: C I/O Error feof - Unit 61 - Return code = 1 BUFFIN: Read Failed: No such file or directory BUFFIN: C I/O Error feof - Unit 68 - Return code = 1 BUFFIN: Read Failed: No such file or directory BUFFIN: C I/O Error feof - Unit 69 - Return code = 1 SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.6 build 10J567 Sun Jan 9 07:11:06 2011 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x919f846b 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x919920fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec ss: 0x0000001f efl: 0x00000206 eip: 0x919920fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libirc.dylib 0x91991000 - 0x91b38fff /usr/lib/libSystem.B.dylib 0x98854000 - 0x98862fff /usr/lib/libz.1.dylib 0x99107000 - 0x9910afff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=1061, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.6 build 10J567 Mon Jan 10 07:40:57 2011 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x919f846b 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x003f5826 7 0x00450bd8 8 0x004698c0 9 0x000026b6 10 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffd47c edx: 0x919920fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffd4b8 esp: 0xbfffd47c ss: 0x0000001f efl: 0x00000206 eip: 0x919920fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libirc.dylib 0x91991000 - 0x91b38fff /usr/lib/libSystem.B.dylib 0x98854000 - 0x98862fff /usr/lib/libz.1.dylib 0x99107000 - 0x9910afff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=11231, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.6 build 10J567 Tue Jan 11 04:07:33 2011 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x919f846b 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x919920fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec ss: 0x0000001f efl: 0x00000206 eip: 0x919920fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libirc.dylib 0x91991000 - 0x91b38fff /usr/lib/libSystem.B.dylib 0x98854000 - 0x98862fff /usr/lib/libz.1.dylib 0x99107000 - 0x9910afff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=1059, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.6 build 10J567 Fri Jan 14 15:53:49 2011 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x919f846b 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x919920fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec ss: 0x0000001f efl: 0x00000206 eip: 0x919920fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libirc.dylib 0x91991000 - 0x91b38fff /usr/lib/libSystem.B.dylib 0x98854000 - 0x98862fff /usr/lib/libz.1.dylib 0x99107000 - 0x9910afff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=1055, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.6 build 10J567 Fri Jan 14 19:41:33 2011 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x919f846b 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x919920fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec ss: 0x0000001f efl: 0x00000206 eip: 0x919920fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libirc.dylib 0x91991000 - 0x91b38fff /usr/lib/libSystem.B.dylib 0x98854000 - 0x98862fff /usr/lib/libz.1.dylib 0x99107000 - 0x9910afff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=1061, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.6 build 10J567 Mon Jan 17 08:29:47 2011 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x919f846b 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x919920fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec ss: 0x0000001f efl: 0x00000206 eip: 0x919920fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_x4gq_1599_200_007067617/lib/libirc.dylib 0x91991000 - 0x91b38fff /usr/lib/libSystem.B.dylib 0x98854000 - 0x98862fff /usr/lib/libz.1.dylib 0x99107000 - 0x9910afff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=1068, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... Signal 3 received, exiting... (1018): called boinc_finish </stderr_txt> ]]>

Latest Trickles Received
Time Sent (UTC)	Host ID	Result ID	Result Name	Timestep	CPU Time (sec)	Average (sec/TS)
17 Jan 2011 16:03:44	844607	12398974	famous_x4gq_1599_200_007067617_0	1,020,266	177,676	0.1741
17 Jan 2011 15:39:39	844607	12398974	famous_x4gq_1599_200_007067617_0	1,010,906	176,110	0.1742
17 Jan 2011 15:12:56	844607	12398974	famous_x4gq_1599_200_007067617_0	1,001,546	174,542	0.1743
17 Jan 2011 14:50:28	844607	12398974	famous_x4gq_1599_200_007067617_0	992,186	172,978	0.1743
17 Jan 2011 14:49:11	844607	12398974	famous_x4gq_1599_200_007067617_0	982,826	171,399	0.1744
17 Jan 2011 14:49:11	844607	12398974	famous_x4gq_1599_200_007067617_0	973,466	169,829	0.1745
17 Jan 2011 14:49:11	844607	12398974	famous_x4gq_1599_200_007067617_0	964,106	168,259	0.1745
17 Jan 2011 14:49:11	844607	12398974	famous_x4gq_1599_200_007067617_0	954,746	166,661	0.1746
17 Jan 2011 14:49:11	844607	12398974	famous_x4gq_1599_200_007067617_0	945,386	164,994	0.1745
17 Jan 2011 14:49:11	844607	12398974	famous_x4gq_1599_200_007067617_0	936,026	163,326	0.1745
17 Jan 2011 14:49:11	844607	12398974	famous_x4gq_1599_200_007067617_0	926,666	161,657	0.1745
17 Jan 2011 14:49:11	844607	12398974	famous_x4gq_1599_200_007067617_0	917,306	159,985	0.1744
17 Jan 2011 14:49:11	844607	12398974	famous_x4gq_1599_200_007067617_0	907,946	158,312	0.1744
17 Jan 2011 14:49:11	844607	12398974	famous_x4gq_1599_200_007067617_0	898,586	156,628	0.1743
17 Jan 2011 00:29:02	844607	12398974	famous_x4gq_1599_200_007067617_0	889,226	154,947	0.1742
17 Jan 2011 00:03:23	844607	12398974	famous_x4gq_1599_200_007067617_0	879,866	153,340	0.1743
16 Jan 2011 23:37:42	844607	12398974	famous_x4gq_1599_200_007067617_0	870,506	151,748	0.1743
14 Jan 2011 23:42:58	844607	12398974	famous_x4gq_1599_200_007067617_0	861,146	150,057	0.1743
14 Jan 2011 22:06:45	844607	12398974	famous_x4gq_1599_200_007067617_0	851,786	148,288	0.1741
14 Jan 2011 21:31:35	844607	12398974	famous_x4gq_1599_200_007067617_0	842,426	146,477	0.1739