Task 11869792

Name	famous_v14n_1999_200_006721223_0
Workunit	6924473
Created	6 Sep 2010, 3:07:45 UTC
Sent	9 Sep 2010, 16:04:29 UTC
Report deadline	9 Dec 2010, 23:31:40 UTC
Received	11 Sep 2010, 22:03:09 UTC
Server state	Over
Outcome	Computation error
Client state	Compute error
Exit status	22 (0x00000016) Unknown error code
Computer ID	844607
Run time	16 hours 30 min 41 sec
CPU time	16 hours 3 min 4 sec
Validate state	Invalid
Credit	1,173.59
Device peak FLOPS	3.11 GFLOPS
Application version	UK Met Office FAMOUS v6.11 i686-apple-darwin
Stderr	<core_client_version>6.10.17</core_client_version> <![CDATA[ <message> process exited with code 22 (0x16, -234) </message> <stderr_txt> om BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.4 build 10F569 Mon Aug 30 09:50:46 2010 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x900781fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x003f5826 7 0x00450bd8 8 0x004698c0 9 0x000026b6 10 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffd47c edx: 0x900120fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffd4b8 esp: 0xbfffd47c ss: 0x0000001f efl: 0x00000206 eip: 0x900120fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ud37_1799_200_006649806/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ud37_1799_200_006649806/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ud37_1799_200_006649806/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ud37_1799_200_006649806/lib/libirc.dylib 0x90011000 - 0x901b7fff /usr/lib/libSystem.B.dylib 0x95689000 - 0x95697fff /usr/lib/libz.1.dylib 0x975b1000 - 0x975b4fff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=45968, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.4 build 10F569 Wed Sep 1 00:58:57 2010 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x900781fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x900120fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec ss: 0x0000001f efl: 0x00000206 eip: 0x900120fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ud37_1799_200_006649806/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ud37_1799_200_006649806/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ud37_1799_200_006649806/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ud37_1799_200_006649806/lib/libirc.dylib 0x90011000 - 0x901b7fff /usr/lib/libSystem.B.dylib 0x95689000 - 0x95697fff /usr/lib/libz.1.dylib 0x975b1000 - 0x975b4fff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=1173, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.4 build 10F569 Wed Sep 1 01:52:36 2010 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x900781fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x003f5826 7 0x00450bd8 8 0x004698c0 9 0x000026b6 10 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffd47c edx: 0x900120fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffd4b8 esp: 0xbfffd47c ss: 0x0000001f efl: 0x00000206 eip: 0x900120fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ud37_1799_200_006649806/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ud37_1799_200_006649806/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ud37_1799_200_006649806/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ud37_1799_200_006649806/lib/libirc.dylib 0x90011000 - 0x901b7fff /usr/lib/libSystem.B.dylib 0x95689000 - 0x95697fff /usr/lib/libz.1.dylib 0x975b1000 - 0x975b4fff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=2369, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.4 build 10F569 Thu Sep 2 10:08:35 2010 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x900781fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x900120fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec ss: 0x0000001f efl: 0x00000206 eip: 0x900120fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ud37_1799_200_006649806/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ud37_1799_200_006649806/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ud37_1799_200_006649806/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ud37_1799_200_006649806/lib/libirc.dylib 0x90011000 - 0x901b7fff /usr/lib/libSystem.B.dylib 0x95689000 - 0x95697fff /usr/lib/libz.1.dylib 0x975b1000 - 0x975b4fff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=1133, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.4 build 10F569 Thu Sep 2 18:13:09 2010 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x900781fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x900120fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec ss: 0x0000001f efl: 0x00000206 eip: 0x900120fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ud37_1799_200_006649806/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ud37_1799_200_006649806/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ud37_1799_200_006649806/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_ud37_1799_200_006649806/lib/libirc.dylib 0x90011000 - 0x901b7fff /usr/lib/libSystem.B.dylib 0x95689000 - 0x95697fff /usr/lib/libz.1.dylib 0x975b1000 - 0x975b4fff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=17103, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... (2809): called boinc_finish [2010- 9- 5 0:51:36:] :: BOINC:: Initializing ... ok. [2010- 9- 5 0:51:36:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_jorj_combined_torsion_it05_run01_A.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_2vik.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 9- 5 1:50:22:] :: BOINC:: Initializing ... ok. [2010- 9- 5 1:50:22:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_jorj_combined_torsion_it05_run01_A.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_2vik.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. Continuing computation from checkpoint: chk_F_00005_0001872_0_0001_FastRelax__chk1_fa ... success! Continuing computation from checkpoint: chk_F_00005_0001872_0_0001_FastRelax__chk2_fa ... success! Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. ====================================================== DONE :: 23 starting structures 10505.1 cpu seconds This process generated 23 decoys from 23 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 9- 5 4:58:22:] :: BOINC:: Initializing ... ok. [2010- 9- 5 4:58:22:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Starting work on structure: _00002 Starting work on structure: _00003 Starting work on structure: _00004 Starting work on structure: _00005 Starting work on structure: _00006 Starting work on structure: _00007 Starting work on structure: _00008 Starting work on structure: _00009 Starting work on structure: _00010 Starting work on structure: _00011 Starting work on structure: _00012 Starting work on structure: _00013 ====================================================== DONE :: 1 starting structures 10413.3 cpu seconds This process generated 13 decoys from 13 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 9- 5 8: 4: 3:] :: BOINC:: Initializing ... ok. [2010- 9- 5 8: 4: 3:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lrm_jorj_combined_torsion_it06_run01_A.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_2h28.fix.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. ====================================================== DONE :: 49 starting structures 10664.8 cpu seconds This process generated 49 decoys from 49 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 9- 5 11: 2: 5:] :: BOINC:: Initializing ... ok. [2010- 9- 5 11: 2: 5:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Starting work on structure: _00002 Starting work on structure: _00003 Starting work on structure: _00004 Starting work on structure: _00005 Starting work on structure: _00006 Starting work on structure: _00007 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 9- 5 21:51:19:] :: BOINC:: Initializing ... ok. [2010- 9- 5 21:51:19:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00007 Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage4_kk_1 ... success! [2010- 9- 5 22: 9:52:] :: BOINC:: Initializing ... ok. [2010- 9- 5 22: 9:52:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00007 Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage4_kk_1 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 9- 5 23: 9:11:] :: BOINC:: Initializing ... ok. [2010- 9- 5 23: 9:11:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00007 Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage4_kk_2 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage4_kk_3 ... success! Starting work on structure: _00008 Starting work on structure: _00009 Starting work on structure: _00010 Starting work on structure: _00011 Starting work on structure: _00012 Starting work on structure: _00013 Starting work on structure: _00014 ====================================================== DONE :: 1 starting structures 10657.7 cpu seconds This process generated 14 decoys from 14 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 9- 6 0:51: 4:] :: BOINC:: Initializing ... ok. [2010- 9- 6 0:51: 4:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lrm_ghoo_sc12_run01_A.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr10_1cc8.fix.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 9- 6 1:53:41:] :: BOINC:: Initializing ... ok. [2010- 9- 6 1:53:41:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lrm_ghoo_sc12_run01_A.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr10_1cc8.fix.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 9- 7 14:11:12:] :: BOINC:: Initializing ... ok. [2010- 9- 7 14:11:12:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lrm_ghoo_sc12_run01_A.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr10_1cc8.fix.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. Fullatom mode .. ====================================================== DONE :: 112 starting structures 7648.99 cpu seconds This process generated 112 decoys from 112 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 9- 7 14:15: 0:] :: BOINC:: Initializing ... ok. [2010- 9- 7 14:15: 0:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lrm_jorj_combined_torsion_it06_run01_A.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr10_2fls.fix.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... ERROR: Unable to open weights. Neither ./dslf_weights.wts nor dslf_weights.wts nor minirosetta_database/scoring/weights/dslf_weights.wts exist ERROR:: Exit from: src/core/scoring/ScoreFunctionFactory.cc line: 178 BOINC:: Error reading and gzipping output datafile: default.out called boinc_finish [2010- 9- 7 14:15:46:] :: BOINC:: Initializing ... ok. [2010- 9- 7 14:15:46:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Starting work on structure: _00002 Starting work on structure: _00003 Starting work on structure: _00004 Starting work on structure: _00005 Starting work on structure: _00006 Starting work on structure: _00007 Starting work on structure: _00008 Starting work on structure: _00009 Starting work on structure: _00010 Starting work on structure: _00011 Starting work on structure: _00012 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 9- 9 0:32:51:] :: BOINC:: Initializing ... ok. [2010- 9- 9 0:32:51:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00012 Starting work on structure: _00013 Starting work on structure: _00014 Starting work on structure: _00015 Starting work on structure: _00016 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 9- 9 1:49:55:] :: BOINC:: Initializing ... ok. [2010- 9- 9 1:49:55:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00016 Continuing computation from checkpoint: chk_S_00000016_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000016_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000016_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000016_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000016_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000016_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000016_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000016_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000016_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000016_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000016_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000016_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000016_ClassicAbinitio__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00000016_ClassicAbinitio__stage4_kk_2 ... success! Continuing computation from checkpoint: chk_S_00000016_ClassicAbinitio__stage4_kk_3 ... success! Continuing computation from checkpoint: chk_stage_1_ClassicRelax__S_00000016_fa ... success! Starting work on structure: _00017 Starting work on structure: _00018 Starting work on structure: _00019 Starting work on structure: _00020 Starting work on structure: _00021 Starting work on structure: _00022 Starting work on structure: _00023 Starting work on structure: _00024 Starting work on structure: _00025 Starting work on structure: _00026 Starting work on structure: _00027 Starting work on structure: _00028 Starting work on structure: _00029 Starting work on structure: _00030 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 9- 9 3:44:54:] :: BOINC:: Initializing ... ok. [2010- 9- 9 3:44:54:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00030 Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage4_kk_2 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage4_kk_3 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 9- 9 4:46:36:] :: BOINC:: Initializing ... ok. [2010- 9- 9 4:46:36:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00030 Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage4_kk_2 ... success! Continuing computation from checkpoint: chk_S_00000030_ClassicAbinitio__stage4_kk_3 ... success! Starting work on structure: _00031 Starting work on structure: _00032 Starting work on structure: _00033 Starting work on structure: _00034 Starting work on structure: _00035 Starting work on structure: _00036 Starting work on structure: _00037 Starting work on structure: _00038 Starting work on structure: _00039 Starting work on structure: _00040 Starting work on structure: _00041 Starting work on structure: _00042 Starting work on structure: _00043 Starting work on structure: _00044 Starting work on structure: _00045 Starting work on structure: _00046 Starting work on structure: _00047 Starting work on structure: _00048 Starting work on structure: _00049 Starting work on structure: _00050 ====================================================== DONE :: 1 starting structures 10595.8 cpu seconds This process generated 50 decoys from 50 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 9- 9 6: 3:12:] :: BOINC:: Initializing ... ok. [2010- 9- 9 6: 3:12:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lrm_ophs_combined_torsion_it07_run01_A.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr8_1a19.fix.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. ====================================================== DONE :: 64 starting structures 10755.3 cpu seconds This process generated 64 decoys from 64 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 9- 9 9: 5: 5:] :: BOINC:: Initializing ... ok. [2010- 9- 9 9: 5: 5:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Starting work on structure: _00002 Starting work on structure: _00003 Starting work on structure: _00004 Starting work on structure: _00005 Starting work on structure: _00006 Starting work on structure: _00007 Starting work on structure: _00008 Starting work on structure: _00009 Starting work on structure: _00010 Starting work on structure: _00011 Starting work on structure: _00012 Starting work on structure: _00013 Starting work on structure: _00014 Starting work on structure: _00015 Starting work on structure: _00016 Starting work on structure: _00017 Starting work on structure: _00018 ====================================================== DONE :: 1 starting structures 10332.9 cpu seconds This process generated 18 decoys from 18 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.4 build 10F569 Fri Sep 10 01:06:23 2010 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x900781fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x003f5826 7 0x00450bd8 8 0x004698c0 9 0x000026b6 10 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffd47c edx: 0x900120fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffd4b8 esp: 0xbfffd47c ss: 0x0000001f efl: 0x00000206 eip: 0x900120fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_v14n_1999_200_006721223/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_v14n_1999_200_006721223/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_v14n_1999_200_006721223/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_v14n_1999_200_006721223/lib/libirc.dylib 0x90011000 - 0x901b7fff /usr/lib/libSystem.B.dylib 0x95689000 - 0x95697fff /usr/lib/libz.1.dylib 0x975b1000 - 0x975b4fff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=3361, iMonCtr=1 Model crash detected, will try to restart... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.4 build 10F569 Fri Sep 10 01:06:25 2010 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x900781fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x900120fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec ss: 0x0000001f efl: 0x00000206 eip: 0x900120fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_v14n_1999_200_006721223/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_v14n_1999_200_006721223/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_v14n_1999_200_006721223/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_v14n_1999_200_006721223/lib/libirc.dylib 0x90011000 - 0x901b7fff /usr/lib/libSystem.B.dylib 0x95689000 - 0x95697fff /usr/lib/libz.1.dylib 0x975b1000 - 0x975b4fff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=3361, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.4 build 10F569 Sat Sep 11 23:13:19 2010 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x992b31fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x003f5826 7 0x00450bd8 8 0x004698c0 9 0x000026b6 10 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffd47c edx: 0x9924d0fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffd4b8 esp: 0xbfffd47c ss: 0x0000001f efl: 0x00000206 eip: 0x9924d0fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_v14n_1999_200_006721223/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_v14n_1999_200_006721223/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_v14n_1999_200_006721223/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_v14n_1999_200_006721223/lib/libirc.dylib 0x96096000 - 0x960a4fff /usr/lib/libz.1.dylib 0x9924c000 - 0x993f2fff /usr/lib/libSystem.B.dylib 0x997c0000 - 0x997c3fff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=1132, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.4 build 10F569 Sun Sep 12 05:29:35 2010 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x992b31fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x003f5826 7 0x00450bd8 8 0x004698c0 9 0x000026b6 10 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffd47c edx: 0x9924d0fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffd4b8 esp: 0xbfffd47c ss: 0x0000001f efl: 0x00000206 eip: 0x9924d0fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_v14n_1999_200_006721223/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_v14n_1999_200_006721223/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_v14n_1999_200_006721223/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_v14n_1999_200_006721223/lib/libirc.dylib 0x96096000 - 0x960a4fff /usr/lib/libz.1.dylib 0x9924c000 - 0x993f2fff /usr/lib/libSystem.B.dylib 0x997c0000 - 0x997c3fff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=10157, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.4 build 10F569 Sun Sep 12 05:50:01 2010 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x992b31fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x9924d0fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec ss: 0x0000001f efl: 0x00000206 eip: 0x9924d0fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_v14n_1999_200_006721223/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_v14n_1999_200_006721223/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_v14n_1999_200_006721223/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_v14n_1999_200_006721223/lib/libirc.dylib 0x96096000 - 0x960a4fff /usr/lib/libz.1.dylib 0x9924c000 - 0x993f2fff /usr/lib/libSystem.B.dylib 0x997c0000 - 0x997c3fff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=10673, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... Model crashed: P_TH_ADJ : NEGATIVE PRESSURE VALUE CREATED. tmp/pipe_dummy Model crashed: P_TH_ADJ : NEGATIVE PRESSURE VALUE CREATED. tmp/pipe_dummy Model crashed: P_TH_ADJ : NEGATIVE PRESSURE VALUE CREATED. tmp/pipe_dummy Model crashed: P_TH_ADJ : NEGATIVE PRESSURE VALUE CREATED. tmp/pipe_dummy SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.4 build 10F569 Sun Sep 12 07:00:45 2010 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x992b31fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc42c edx: 0x9924d0fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc468 esp: 0xbfffc42c ss: 0x0000001f efl: 0x00000206 eip: 0x9924d0fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_v14n_1999_200_006721223/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_v14n_1999_200_006721223/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_v14n_1999_200_006721223/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_v14n_1999_200_006721223/lib/libirc.dylib 0x96096000 - 0x960a4fff /usr/lib/libz.1.dylib 0x9924c000 - 0x993f2fff /usr/lib/libSystem.B.dylib 0x997c0000 - 0x997c3fff /usr/lib/system/libmathCommon.A.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=10769, iMonCtr=1 Model crash detected, will try to restart... Model crashed: P_TH_ADJ : NEGATIVE PRESSURE VALUE CREATED. tmp/pipe_dummy Sorry, too many model crashes! :-( (10769): called boinc_finish </stderr_txt> ]]>

Latest Trickles Received
Time Sent (UTC)	Host ID	Result ID	Result Name	Timestep	CPU Time (sec)	Average (sec/TS)
11 Sep 2010 21:42:28	844607	11869792	famous_v14n_1999_200_006721223_0	355,706	56,563	0.1590
11 Sep 2010 21:15:52	844607	11869792	famous_v14n_1999_200_006721223_0	346,346	55,010	0.1588
11 Sep 2010 20:38:09	844607	11869792	famous_v14n_1999_200_006721223_0	336,986	53,459	0.1586
11 Sep 2010 19:16:51	844607	11869792	famous_v14n_1999_200_006721223_0	327,626	51,956	0.1586
11 Sep 2010 18:49:34	844607	11869792	famous_v14n_1999_200_006721223_0	318,266	50,455	0.1585
11 Sep 2010 18:27:32	844607	11869792	famous_v14n_1999_200_006721223_0	308,906	48,969	0.1585
11 Sep 2010 18:00:45	844607	11869792	famous_v14n_1999_200_006721223_0	299,546	47,462	0.1584
11 Sep 2010 17:34:40	844607	11869792	famous_v14n_1999_200_006721223_0	290,186	45,955	0.1584
11 Sep 2010 17:08:05	844607	11869792	famous_v14n_1999_200_006721223_0	280,826	44,428	0.1582
11 Sep 2010 16:46:18	844607	11869792	famous_v14n_1999_200_006721223_0	271,466	42,927	0.1581
11 Sep 2010 16:20:07	844607	11869792	famous_v14n_1999_200_006721223_0	262,106	41,426	0.1581
11 Sep 2010 15:53:47	844607	11869792	famous_v14n_1999_200_006721223_0	252,746	39,959	0.1581
11 Sep 2010 15:27:32	844607	11869792	famous_v14n_1999_200_006721223_0	243,386	38,487	0.1581
11 Sep 2010 15:05:48	844607	11869792	famous_v14n_1999_200_006721223_0	234,026	37,015	0.1582
11 Sep 2010 14:38:57	844607	11869792	famous_v14n_1999_200_006721223_0	224,666	35,559	0.1583
10 Sep 2010 02:54:16	844607	11869792	famous_v14n_1999_200_006721223_0	215,306	34,112	0.1584
10 Sep 2010 02:27:41	844607	11869792	famous_v14n_1999_200_006721223_0	205,946	32,667	0.1586
10 Sep 2010 02:05:53	844607	11869792	famous_v14n_1999_200_006721223_0	196,586	31,229	0.1589
10 Sep 2010 01:39:10	844607	11869792	famous_v14n_1999_200_006721223_0	187,226	29,661	0.1584
10 Sep 2010 01:09:34	844607	11869792	famous_v14n_1999_200_006721223_0	177,866	28,085	0.1579