Task 11637351

Name	famous_u7n6_1799_200_006642749_6
Workunit	6846121
Created	7 Aug 2010, 1:18:26 UTC
Sent	7 Aug 2010, 1:19:10 UTC
Report deadline	6 Nov 2010, 8:46:21 UTC
Received	8 Aug 2010, 14:22:03 UTC
Server state	Over
Outcome	Computation error
Client state	Compute error
Exit status	22 (0x00000016) Unknown error code
Computer ID	844607
Run time	2 hours 44 min 4 sec
CPU time	2 hours 43 min 37 sec
Validate state	Invalid
Credit	185.38
Device peak FLOPS	3.11 GFLOPS
Application version	UK Met Office FAMOUS v6.11 i686-apple-darwin
Stderr	<core_client_version>6.10.17</core_client_version> <![CDATA[ <message> process exited with code 22 (0x16, -234) </message> <stderr_txt> Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage4_kk_2 ... success! Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage4_kk_3 ... success! Starting work on structure: _00003 Starting work on structure: _00004 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 2 4:59:52:] :: BOINC:: Initializing ... ok. [2010- 8- 2 4:59:52:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00004 Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage4_kk_2 ... success! Continuing computation from checkpoint: chk_S_00000004_ClassicAbinitio__stage4_kk_3 ... success! Starting work on structure: _00005 Starting work on structure: _00006 Starting work on structure: _00007 Starting work on structure: _00008 ====================================================== DONE :: 1 starting structures 10029.8 cpu seconds This process generated 8 decoys from 8 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 8- 2 6:28: 5:] :: BOINC:: Initializing ... ok. [2010- 8- 2 6:28: 5:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/rs_stg1_core_reb_sasa_vol_t303__run1.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. ====================================================== DONE :: 2 starting structures 9723.39 cpu seconds This process generated 2 decoys from 2 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 8- 2 9:12:22:] :: BOINC:: Initializing ... ok. [2010- 8- 2 9:12:22:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Starting work on structure: _00002 Starting work on structure: _00003 Starting work on structure: _00004 Starting work on structure: _00005 Starting work on structure: _00006 Starting work on structure: _00007 Starting work on structure: _00008 Starting work on structure: _00009 Starting work on structure: _00010 Starting work on structure: _00011 Starting work on structure: _00012 Starting work on structure: _00013 Starting work on structure: _00014 Starting work on structure: _00015 Starting work on structure: _00016 Starting work on structure: _00017 Starting work on structure: _00018 Starting work on structure: _00019 Starting work on structure: _00020 Starting work on structure: _00021 Starting work on structure: _00022 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 2 23:56:57:] :: BOINC:: Initializing ... ok. [2010- 8- 2 23:56:57:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00022 Starting work on structure: _00023 Starting work on structure: _00024 Starting work on structure: _00025 ====================================================== DONE :: 1 starting structures 10402.3 cpu seconds This process generated 25 decoys from 25 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 8- 3 0:25:53:] :: BOINC:: Initializing ... ok. [2010- 8- 3 0:25:53:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. ====================================================== DONE :: 802 starting structures 10790.3 cpu seconds This process generated 802 decoys from 802 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 8- 3 3:26:11:] :: BOINC:: Initializing ... ok. [2010- 8- 3 3:26:11:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Starting work on structure: _00002 Starting work on structure: _00003 Starting work on structure: _00004 Starting work on structure: _00005 ====================================================== DONE :: 1 starting structures 9319.95 cpu seconds This process generated 5 decoys from 5 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 8- 3 6: 1:52:] :: BOINC:: Initializing ... ok. [2010- 8- 3 6: 1:52:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lrm_ophs_combined_torsion_it07_run01_A.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr13_2ib0.fix.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. ====================================================== DONE :: 36 starting structures 10722.2 cpu seconds This process generated 36 decoys from 36 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 8- 3 9: 1:38:] :: BOINC:: Initializing ... ok. [2010- 8- 3 9: 1:38:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Starting work on structure: _00002 Starting work on structure: _00003 Starting work on structure: _00004 Starting work on structure: _00005 Starting work on structure: _00006 Starting work on structure: _00007 Starting work on structure: _00008 Starting work on structure: _00009 Starting work on structure: _00010 Starting work on structure: _00011 Starting work on structure: _00012 Starting work on structure: _00013 Starting work on structure: _00014 Starting work on structure: _00015 Starting work on structure: _00016 Starting work on structure: _00017 Starting work on structure: _00018 Starting work on structure: _00019 Starting work on structure: _00020 ====================================================== DONE :: 1 starting structures 10686.5 cpu seconds This process generated 20 decoys from 20 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 8- 3 12: 0:17:] :: BOINC:: Initializing ... ok. [2010- 8- 3 12: 0:17:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Starting work on structure: _00002 Starting work on structure: _00003 Starting work on structure: _00004 Starting work on structure: _00005 Starting work on structure: _00006 Starting work on structure: _00007 Starting work on structure: _00008 Starting work on structure: _00009 Starting work on structure: _00010 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 3 16: 9:32:] :: BOINC:: Initializing ... ok. [2010- 8- 3 16: 9:33:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00010 Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_3_iter1_3 ... success! Starting work on structure: _00011 Starting work on structure: _00012 Starting work on structure: _00013 Starting work on structure: _00014 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 3 18:58: 8:] :: BOINC:: Initializing ... ok. [2010- 8- 3 18:58: 9:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00014 Continuing computation from checkpoint: chk_S_00000014_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000014_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000014_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000014_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000014_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000014_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000014_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000014_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000014_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000014_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000014_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000014_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000014_ClassicAbinitio__stage4_kk_1 ... success! [2010- 8- 3 19:12:51:] :: BOINC:: Initializing ... ok. [2010- 8- 3 19:12:51:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00015 Starting work on structure: _00016 Starting work on structure: _00017 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 4 5:50:51:] :: BOINC:: Initializing ... ok. [2010- 8- 4 5:50:51:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00017 Continuing computation from checkpoint: chk_S_00000017_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000017_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000017_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000017_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000017_ClassicAbinitio__stage_3_iter1_3 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 4 5:55:15:] :: BOINC:: Initializing ... ok. [2010- 8- 4 5:55:15:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00017 Continuing computation from checkpoint: chk_S_00000017_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000017_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000017_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000017_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000017_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000017_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000017_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000017_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000017_ClassicAbinitio__stage_3_iter1_7 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 4 6: 6: 4:] :: BOINC:: Initializing ... ok. [2010- 8- 4 6: 6: 4:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00017 Continuing computation from checkpoint: chk_S_00000017_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000017_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000017_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000017_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000017_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000017_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000017_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000017_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000017_ClassicAbinitio__stage_3_iter1_7 ... success! Starting work on structure: _00018 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 4 6:17:56:] :: BOINC:: Initializing ... ok. [2010- 8- 4 6:17:56:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00018 Continuing computation from checkpoint: chk_S_00000018_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000018_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000018_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000018_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000018_ClassicAbinitio__stage_3_iter1_3 ... success! ====================================================== DONE :: 1 starting structures 10739.9 cpu seconds This process generated 18 decoys from 18 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 8- 4 13:17:41:] :: BOINC:: Initializing ... ok. [2010- 8- 4 13:17:41:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_jorj_combined_torsion_it05_run01_A.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_1bk2.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 5 4:10:35:] :: BOINC:: Initializing ... ok. [2010- 8- 5 4:10:35:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_jorj_combined_torsion_it05_run01_A.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_1bk2.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... [2010- 8- 5 4:25:38:] :: BOINC:: Initializing ... ok. [2010- 8- 5 4:25:38:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_jorj_combined_torsion_it05_run01_A.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_1bk2.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 5 4:31:39:] :: BOINC:: Initializing ... ok. [2010- 8- 5 4:31:39:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_jorj_combined_torsion_it05_run01_A.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_1bk2.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. Fullatom mode .. ====================================================== DONE :: 66 starting structures 7827.09 cpu seconds This process generated 66 decoys from 66 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 8- 5 4:36:36:] :: BOINC:: Initializing ... ok. [2010- 8- 5 4:36:36:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_jorj_combined_torsion_it05_run01_A.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_1a8o.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 5 7:14:57:] :: BOINC:: Initializing ... ok. [2010- 8- 5 7:14:57:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_jorj_combined_torsion_it05_run01_A.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_1a8o.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. Fullatom mode .. ====================================================== DONE :: 65 starting structures 9728.77 cpu seconds This process generated 65 decoys from 65 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 8- 5 7:20:39:] :: BOINC:: Initializing ... ok. [2010- 8- 5 7:20:39:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 5 23:52:27:] :: BOINC:: Initializing ... ok. [2010- 8- 5 23:52:27:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000001_ClassicAbinitio__stage_3_iter1_3 ... success! Starting work on structure: _00002 Starting work on structure: _00003 ====================================================== DONE :: 1 starting structures 10131.1 cpu seconds This process generated 3 decoys from 3 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 8- 6 3:19:35:] :: BOINC:: Initializing ... ok. [2010- 8- 6 3:19:35:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Starting work on structure: _00002 Starting work on structure: _00003 ====================================================== DONE :: 1 starting structures 8713.2 cpu seconds This process generated 3 decoys from 3 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 8- 6 5:45:40:] :: BOINC:: Initializing ... ok. [2010- 8- 6 5:45:40:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lrm_jorj_combined_torsion_it06_run01_A.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr10_1o5u.fix.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. ====================================================== DONE :: 60 starting structures 10810.2 cpu seconds This process generated 60 decoys from 60 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 8- 6 8:46:33:] :: BOINC:: Initializing ... ok. [2010- 8- 6 8:46:33:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lrm_jorj_combined_torsion_it06_run01_A.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr10_1enh.fix.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. ====================================================== DONE :: 100 starting structures 8152.88 cpu seconds This process generated 100 decoys from 100 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 8- 6 11:22:29:] :: BOINC:: Initializing ... ok. [2010- 8- 6 11:22:29:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Starting work on structure: _00002 Starting work on structure: _00003 Starting work on structure: _00004 ====================================================== DONE :: 1 starting structures 9403.11 cpu seconds This process generated 4 decoys from 4 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 8- 6 14: 0:36:] :: BOINC:: Initializing ... ok. [2010- 8- 6 14: 0:36:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_jorj_combined_torsion_it06_run01_B.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_1bmg.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 6 15:43:20:] :: BOINC:: Initializing ... ok. [2010- 8- 6 15:43:20:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_jorj_combined_torsion_it06_run01_B.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_1bmg.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 6 16:43:48:] :: BOINC:: Initializing ... ok. [2010- 8- 6 16:43:48:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_jorj_combined_torsion_it06_run01_B.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_1bmg.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 7 0:44:24:] :: BOINC:: Initializing ... ok. [2010- 8- 7 0:44:24:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_jorj_combined_torsion_it06_run01_B.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_1bmg.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 8- 7 1:48:57:] :: BOINC:: Initializing ... ok. [2010- 8- 7 1:48:57:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_jorj_combined_torsion_it06_run01_B.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_1bmg.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. Fullatom mode .. ====================================================== DONE :: 18 starting structures 5905.02 cpu seconds This process generated 18 decoys from 18 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish Model crashed: ATM_DYN : INVALID THETA DETECTED. tmp/pipe_dummy SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.4 build 10F569 Sat Aug 7 13:03:53 2010 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x94ca01fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x94c3a0fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec ss: 0x0000001f efl: 0x00000206 eip: 0x94c3a0fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u7n6_1799_200_006642749/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u7n6_1799_200_006642749/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u7n6_1799_200_006642749/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u7n6_1799_200_006642749/lib/libirc.dylib 0x90eef000 - 0x90ef2fff /usr/lib/system/libmathCommon.A.dylib 0x93aab000 - 0x93ab9fff /usr/lib/libz.1.dylib 0x94c39000 - 0x94ddffff /usr/lib/libSystem.B.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=15904, iMonCtr=1 Model crash detected, will try to restart... SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.4 build 10F569 Sat Aug 7 13:03:55 2010 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x94ca01fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x94c3a0fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec ss: 0x0000001f efl: 0x00000206 eip: 0x94c3a0fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u7n6_1799_200_006642749/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u7n6_1799_200_006642749/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u7n6_1799_200_006642749/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u7n6_1799_200_006642749/lib/libirc.dylib 0x90eef000 - 0x90ef2fff /usr/lib/system/libmathCommon.A.dylib 0x93aab000 - 0x93ab9fff /usr/lib/libz.1.dylib 0x94c39000 - 0x94ddffff /usr/lib/libSystem.B.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=15904, iMonCtr=1 Model crash detected, will try to restart... Model crashed: ATM_DYN : INVALID THETA DETECTED. tmp/pipe_dummy Model crashed: ATM_DYN : INVALID THETA DETECTED. tmp/pipe_dummy Model crashed: ATM_DYN : INVALID THETA DETECTED. tmp/pipe_dummy Sorry, too many model crashes! :-( (15904): called boinc_finish </stderr_txt> ]]>

Latest Trickles Received
Time Sent (UTC)	Host ID	Result ID	Result Name	Timestep	CPU Time (sec)	Average (sec/TS)
08 Aug 2010 14:23:25	844607	11637351	famous_u7n6_1799_200_006642749_6	56,186	8,539	0.1520
08 Aug 2010 14:23:25	844607	11637351	famous_u7n6_1799_200_006642749_6	46,826	7,113	0.1519
08 Aug 2010 14:23:25	844607	11637351	famous_u7n6_1799_200_006642749_6	37,466	5,693	0.1520
08 Aug 2010 14:23:25	844607	11637351	famous_u7n6_1799_200_006642749_6	28,106	4,268	0.1519
08 Aug 2010 14:23:25	844607	11637351	famous_u7n6_1799_200_006642749_6	18,746	2,843	0.1517
08 Aug 2010 14:23:25	844607	11637351	famous_u7n6_1799_200_006642749_6	9,386	1,423	0.1516