 |
|
| Name | famous_s3cz_599_200_006669334_0 |
| Workunit | 6872588 |
| Created | 29 Jul 2010, 10:23:43 UTC |
| Sent | 30 Jul 2010, 1:15:31 UTC |
| Report deadline | 29 Oct 2010, 8:42:42 UTC |
| Received | 4 Aug 2010, 0:11:42 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 193 (0x000000C1) EXIT_SIGNAL |
| Computer ID | 844607 |
| Run time | 2 days 1 hours 24 min 51 sec |
| CPU time | 2 days 0 hours 23 min 52 sec |
| Validate state | Invalid |
| Credit | 3,613.24 |
| Device peak FLOPS | 3.24 GFLOPS |
| Application version | UK Met Office FAMOUS v6.11 i686-apple-darwin |
| Stderr | <core_client_version>6.10.17</core_client_version>
<![CDATA[
<message>
process exited with code 193 (0xc1, -63)
</message>
<stderr_txt>
_S_1PZXA_10000_0001_Remodel__loop_2_5_0_F ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-19 15: 5:44:] :: BOINC:: Initializing ... ok.
[2010- 7-19 15: 5:44:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/rb_07_17_266_903_rs_stg0_lrlxjcst_t000__casp9.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-19 15:43: 6:] :: BOINC:: Initializing ... ok.
[2010- 7-19 15:43: 6:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/rb_07_17_266_903_rs_stg0_lrlxjcst_t000__casp9.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_1PZXA_10000_0001_Remodel__loop_1_0_0_S ... success!
Continuing computation from checkpoint: chk_S_1PZXA_10000_0001_Remodel__loop_2_0_0_F ... success!
Continuing computation from checkpoint: chk_S_1PZXA_10000_0001_Remodel__loop_2_1_0_F ... success!
Continuing computation from checkpoint: chk_S_1PZXA_10000_0001_Remodel__loop_2_2_0_F ... success!
Continuing computation from checkpoint: chk_S_1PZXA_10000_0001_Remodel__loop_2_3_0_F ... success!
Continuing computation from checkpoint: chk_S_1PZXA_10000_0001_Remodel__loop_2_4_0_F ... success!
Continuing computation from checkpoint: chk_S_1PZXA_10000_0001_Remodel__loop_2_5_0_F ... success!
Continuing computation from checkpoint: chk_S_1PZXA_10000_0001_Remodel__loop_2_6_0_F ... success!
Continuing computation from checkpoint: chk_S_1PZXA_10000_0001_Remodel__loop_2_7_0_F ... success!
Continuing computation from checkpoint: chk_S_1PZXA_10000_0001_Remodel__loop_3_0_0_S ... success!
Continuing computation from checkpoint: chk_S_1PZXA_10000_0001_Remodel__loop_4_0_0_S ... success!
======================================================
DONE :: 2 starting structures 8550.51 cpu seconds
This process generated 2 decoys from 2 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 7-19 17:32:51:] :: BOINC:: Initializing ... ok.
[2010- 7-19 17:32:51:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00001
Starting work on structure: _00002
Starting work on structure: _00003
Starting work on structure: _00004
Starting work on structure: _00005
Starting work on structure: _00006
Starting work on structure: _00007
Starting work on structure: _00008
Starting work on structure: _00009
Starting work on structure: _00010
Starting work on structure: _00011
Starting work on structure: _00012
Starting work on structure: _00013
Starting work on structure: _00014
Starting work on structure: _00015
Starting work on structure: _00016
Starting work on structure: _00017
Starting work on structure: _00018
Starting work on structure: _00019
Starting work on structure: _00020
Starting work on structure: _00021
Starting work on structure: _00022
Starting work on structure: _00023
Starting work on structure: _00024
Starting work on structure: _00025
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-20 5:12:59:] :: BOINC:: Initializing ... ok.
[2010- 7-20 5:12:59:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00025
Starting work on structure: _00026
Starting work on structure: _00027
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-20 6: 9: 0:] :: BOINC:: Initializing ... ok.
[2010- 7-20 6: 9: 0:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00027
Continuing computation from checkpoint: chk_S_00000027_ClassicAbinitio__stage_1 ... success!
Continuing computation from checkpoint: chk_S_00000027_ClassicAbinitio__stage_2 ... success!
Continuing computation from checkpoint: chk_S_00000027_ClassicAbinitio__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00000027_ClassicAbinitio__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00000027_ClassicAbinitio__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00000027_ClassicAbinitio__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00000027_ClassicAbinitio__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_00000027_ClassicAbinitio__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_00000027_ClassicAbinitio__stage_3_iter1_7 ... success!
Starting work on structure: _00028
Starting work on structure: _00029
Starting work on structure: _00030
Starting work on structure: _00031
======================================================
DONE :: 1 starting structures 10798.6 cpu seconds
This process generated 31 decoys from 31 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 7-20 6:35:56:] :: BOINC:: Initializing ... ok.
[2010- 7-20 6:35:56:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-20 7:22:31:] :: BOINC:: Initializing ... ok.
[2010- 7-20 7:22:31:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
[2010- 7-20 7:23:34:] :: BOINC:: Initializing ... ok.
[2010- 7-20 7:23:34:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-20 13:50:45:] :: BOINC:: Initializing ... ok.
[2010- 7-20 13:50:45:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-21 0: 9:19:] :: BOINC:: Initializing ... ok.
[2010- 7-21 0: 9:19:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-21 0:11:10:] :: BOINC:: Initializing ... ok.
[2010- 7-21 0:11:10:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
======================================================
DONE :: 413 starting structures 10767.2 cpu seconds
This process generated 413 decoys from 413 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 7-22 8: 2:11:] :: BOINC:: Initializing ... ok.
[2010- 7-22 8: 2:11:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00001
Starting work on structure: _00002
Starting work on structure: _00003
Starting work on structure: _00004
Starting work on structure: _00005
Starting work on structure: _00006
Starting work on structure: _00007
Starting work on structure: _00008
Starting work on structure: _00009
Starting work on structure: _00010
Starting work on structure: _00011
Starting work on structure: _00012
Starting work on structure: _00013
Starting work on structure: _00014
Starting work on structure: _00015
Starting work on structure: _00016
Starting work on structure: _00017
Starting work on structure: _00018
Starting work on structure: _00019
Starting work on structure: _00020
Starting work on structure: _00021
======================================================
DONE :: 1 starting structures 10496.5 cpu seconds
This process generated 21 decoys from 21 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 7-22 11: 9: 1:] :: BOINC:: Initializing ... ok.
[2010- 7-22 11: 9: 1:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00001
Starting work on structure: _00002
Starting work on structure: _00003
Starting work on structure: _00004
Starting work on structure: _00005
Starting work on structure: _00006
Starting work on structure: _00007
Starting work on structure: _00008
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-22 13:13:14:] :: BOINC:: Initializing ... ok.
[2010- 7-22 13:13:14:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00008
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_1 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_2 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_7 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_8 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_9 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_10 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage4_kk_1 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage4_kk_2 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage4_kk_3 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-22 13:15:11:] :: BOINC:: Initializing ... ok.
[2010- 7-22 13:15:11:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00008
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_1 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_2 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_7 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_8 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_9 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_10 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage4_kk_1 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage4_kk_2 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage4_kk_3 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-22 13:18:44:] :: BOINC:: Initializing ... ok.
[2010- 7-22 13:18:44:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00008
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_1 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_2 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_7 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_8 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_9 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_10 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage4_kk_1 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage4_kk_2 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage4_kk_3 ... success!
Continuing computation from checkpoint: chk_S_00000008_FastRelax__chk1_fa ... success!
Continuing computation from checkpoint: chk_S_00000008_FastRelax__chk2_fa ... success!
Continuing computation from checkpoint: chk_S_00000008_FastRelax__chk3_fa ... success!
Continuing computation from checkpoint: chk_S_00000008_FastRelax__chk4_fa ... success!
Starting work on structure: _00009
Starting work on structure: _00010
Starting work on structure: _00011
Starting work on structure: _00012
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-22 13:56:28:] :: BOINC:: Initializing ... ok.
[2010- 7-22 13:56:28:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00012
======================================================
DONE :: 1 starting structures 10175.5 cpu seconds
This process generated 12 decoys from 12 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 7-27 9:50:57:] :: BOINC:: Initializing ... ok.
[2010- 7-27 9:50:57:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00001
Starting work on structure: _00002
Starting work on structure: _00003
Starting work on structure: _00004
Starting work on structure: _00005
Starting work on structure: _00006
Starting work on structure: _00007
Starting work on structure: _00008
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-27 10:49:56:] :: BOINC:: Initializing ... ok.
[2010- 7-27 10:49:57:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00008
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_1 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_2 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_7 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_8 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_9 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_10 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage4_kk_1 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-27 10:56: 5:] :: BOINC:: Initializing ... ok.
[2010- 7-27 10:56: 5:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00008
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_1 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_2 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_7 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_8 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_9 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_10 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage4_kk_1 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage4_kk_2 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage4_kk_3 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-27 11: 1:17:] :: BOINC:: Initializing ... ok.
[2010- 7-27 11: 1:17:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00008
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_1 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_2 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_7 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_8 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_9 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_10 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage4_kk_1 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage4_kk_2 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage4_kk_3 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-28 0:15:25:] :: BOINC:: Initializing ... ok.
[2010- 7-28 0:15:25:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00008
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_1 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_2 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_7 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_8 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_9 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_10 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage4_kk_1 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage4_kk_2 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage4_kk_3 ... success!
[2010- 7-28 0:39:20:] :: BOINC:: Initializing ... ok.
[2010- 7-28 0:39:20:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00008
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_1 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_2 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_7 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_8 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_9 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage_3_iter1_10 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage4_kk_1 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage4_kk_2 ... success!
Continuing computation from checkpoint: chk_S_00000008_ClassicAbinitio__stage4_kk_3 ... success!
Starting work on structure: _00009
Starting work on structure: _00010
Starting work on structure: _00011
Starting work on structure: _00012
Starting work on structure: _00013
Starting work on structure: _00014
Starting work on structure: _00015
Starting work on structure: _00016
Starting work on structure: _00017
Starting work on structure: _00018
Starting work on structure: _00019
Starting work on structure: _00020
Starting work on structure: _00021
Starting work on structure: _00022
Starting work on structure: _00023
======================================================
DONE :: 1 starting structures 10356.4 cpu seconds
This process generated 23 decoys from 23 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 7-28 2:37:55:] :: BOINC:: Initializing ... ok.
[2010- 7-28 2:37:55:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00001
Starting work on structure: _00002
Starting work on structure: _00003
Starting work on structure: _00004
Starting work on structure: _00005
Starting work on structure: _00006
Starting work on structure: _00007
Starting work on structure: _00008
Starting work on structure: _00009
Starting work on structure: _00010
Starting work on structure: _00011
Starting work on structure: _00012
Starting work on structure: _00013
Starting work on structure: _00014
Starting work on structure: _00015
Starting work on structure: _00016
Starting work on structure: _00017
======================================================
DONE :: 1 starting structures 10587.3 cpu seconds
This process generated 17 decoys from 17 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 7-28 5:35:42:] :: BOINC:: Initializing ... ok.
[2010- 7-28 5:35:42:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00001
Starting work on structure: _00002
Starting work on structure: _00003
Starting work on structure: _00004
Starting work on structure: _00005
Starting work on structure: _00006
Starting work on structure: _00007
Starting work on structure: _00008
Starting work on structure: _00009
Starting work on structure: _00010
Starting work on structure: _00011
Starting work on structure: _00012
Starting work on structure: _00013
Starting work on structure: _00014
Starting work on structure: _00015
Starting work on structure: _00016
Starting work on structure: _00017
Starting work on structure: _00018
======================================================
DONE :: 1 starting structures 10346.2 cpu seconds
This process generated 18 decoys from 18 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 7-28 8:29:33:] :: BOINC:: Initializing ... ok.
[2010- 7-28 8:29:33:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_jorj_combined_torsion_it06_run01_B.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_1ptq.out.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-28 15: 0:44:] :: BOINC:: Initializing ... ok.
[2010- 7-28 15: 0:44:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_jorj_combined_torsion_it06_run01_B.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_1ptq.out.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-28 21: 5: 7:] :: BOINC:: Initializing ... ok.
[2010- 7-28 21: 5: 7:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_jorj_combined_torsion_it06_run01_B.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_1ptq.out.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Fullatom mode ..
Fullatom mode ..
======================================================
DONE :: 57 starting structures 6558.59 cpu seconds
This process generated 57 decoys from 57 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 7-29 0:33:34:] :: BOINC:: Initializing ... ok.
[2010- 7-29 0:33:34:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00001
Starting work on structure: _00002
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-29 2:39:23:] :: BOINC:: Initializing ... ok.
[2010- 7-29 2:39:23:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
[2010- 7-29 3:39:44:] :: BOINC:: Initializing ... ok.
[2010- 7-29 3:39:44:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00002
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_1 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_2 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_7 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_8 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_9 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_10 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage4_kk_1 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage4_kk_2 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage4_kk_3 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-29 9:33: 5:] :: BOINC:: Initializing ... ok.
[2010- 7-29 9:33: 5:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00002
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_1 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_2 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_7 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_8 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_9 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage_3_iter1_10 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage4_kk_1 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage4_kk_2 ... success!
Continuing computation from checkpoint: chk_S_00000002_ClassicAbinitio__stage4_kk_3 ... success!
Starting work on structure: _00003
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-29 12:16: 7:] :: BOINC:: Initializing ... ok.
[2010- 7-29 12:16: 7:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
======================================================
DONE :: 1 starting structures 7684.12 cpu seconds
This process generated 2 decoys from 2 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
SIGSEGV: segmentation violation
Crashed executable name: famous_um_6.11_i686-apple-darwin
built using BOINC library version 6.11.1
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.6.4 build 10F569
Sun Aug 1 07:27:13 2010
sh: /usr/bin/atos: No such file or directory
0 0x0048fdcf 1 0x0049054a 2 0x98e581fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x98df20fa
edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec
ss: 0x0000001f efl: 0x00000206 eip: 0x98df20fa cs: 0x00000007
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037
Binary Images Description:
0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin
0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_s3cz_599_200_006669334/lib/libsvml.dylib
0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_s3cz_599_200_006669334/lib/libifcoremt.dylib
0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_s3cz_599_200_006669334/lib/libimf.dylib
0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_s3cz_599_200_006669334/lib/libirc.dylib
0x90702000 - 0x90710fff /usr/lib/libz.1.dylib
0x95032000 - 0x95035fff /usr/lib/system/libmathCommon.A.dylib
0x98df1000 - 0x98f97fff /usr/lib/libSystem.B.dylib
Exiting...
Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=1098, iMonCtr=1
Model crash detected, will try to restart...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
Signal 3 received, exiting...
(1124): called boinc_finish
</stderr_txt>
]]>
|
| Latest Trickles Received | ||||||
|---|---|---|---|---|---|---|
| Time Sent (UTC) | Host ID | Result ID | Result Name | Timestep | CPU Time (sec) | Average (sec/TS) |
| 04 Aug 2010 00:20:37 | 844607 | 11623633 | famous_s3cz_599_200_006669334_0 | 1,095,146 | 173,635 | 0.1585 |
| 04 Aug 2010 00:20:37 | 844607 | 11623633 | famous_s3cz_599_200_006669334_0 | 1,085,786 | 172,176 | 0.1586 |
| 04 Aug 2010 00:20:37 | 844607 | 11623633 | famous_s3cz_599_200_006669334_0 | 1,076,426 | 170,727 | 0.1586 |
| 04 Aug 2010 00:20:37 | 844607 | 11623633 | famous_s3cz_599_200_006669334_0 | 1,067,066 | 169,267 | 0.1586 |
| 04 Aug 2010 00:20:37 | 844607 | 11623633 | famous_s3cz_599_200_006669334_0 | 1,057,706 | 167,783 | 0.1586 |
| 04 Aug 2010 00:20:37 | 844607 | 11623633 | famous_s3cz_599_200_006669334_0 | 1,048,346 | 166,306 | 0.1586 |
| 04 Aug 2010 00:20:36 | 844607 | 11623633 | famous_s3cz_599_200_006669334_0 | 1,038,986 | 164,857 | 0.1587 |
| 04 Aug 2010 00:20:36 | 844607 | 11623633 | famous_s3cz_599_200_006669334_0 | 1,029,626 | 163,421 | 0.1587 |
| 04 Aug 2010 00:20:36 | 844607 | 11623633 | famous_s3cz_599_200_006669334_0 | 1,020,266 | 161,984 | 0.1588 |
| 04 Aug 2010 00:20:36 | 844607 | 11623633 | famous_s3cz_599_200_006669334_0 | 1,010,906 | 160,565 | 0.1588 |
| 04 Aug 2010 00:20:36 | 844607 | 11623633 | famous_s3cz_599_200_006669334_0 | 1,001,546 | 159,151 | 0.1589 |
| 03 Aug 2010 03:23:05 | 844607 | 11623633 | famous_s3cz_599_200_006669334_0 | 992,186 | 157,740 | 0.1590 |
| 03 Aug 2010 03:23:05 | 844607 | 11623633 | famous_s3cz_599_200_006669334_0 | 982,826 | 156,329 | 0.1591 |
| 03 Aug 2010 03:23:05 | 844607 | 11623633 | famous_s3cz_599_200_006669334_0 | 973,466 | 154,916 | 0.1591 |
| 03 Aug 2010 00:20:24 | 844607 | 11623633 | famous_s3cz_599_200_006669334_0 | 964,106 | 153,483 | 0.1592 |
| 03 Aug 2010 00:20:24 | 844607 | 11623633 | famous_s3cz_599_200_006669334_0 | 954,746 | 152,036 | 0.1592 |
| 03 Aug 2010 00:20:24 | 844607 | 11623633 | famous_s3cz_599_200_006669334_0 | 945,386 | 150,583 | 0.1593 |
| 03 Aug 2010 00:20:24 | 844607 | 11623633 | famous_s3cz_599_200_006669334_0 | 936,026 | 149,120 | 0.1593 |
| 03 Aug 2010 00:20:24 | 844607 | 11623633 | famous_s3cz_599_200_006669334_0 | 926,666 | 147,627 | 0.1593 |
| 03 Aug 2010 00:20:24 | 844607 | 11623633 | famous_s3cz_599_200_006669334_0 | 917,306 | 146,134 | 0.1593 |
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