Task 11593444

Name	famous_r217_799_200_006666443_5
Workunit	6869815
Created	29 Jun 2010, 23:21:31 UTC
Sent	29 Jun 2010, 23:46:03 UTC
Report deadline	29 Sep 2010, 7:13:14 UTC
Received	4 Jul 2010, 9:39:24 UTC
Server state	Over
Outcome	Computation error
Client state	Compute error
Exit status	22 (0x00000016) Unknown error code
Computer ID	844607
Run time	3 hours 53 min 6 sec
CPU time	3 hours 52 min 16 sec
Validate state	Invalid
Credit	278.02
Device peak FLOPS	3.11 GFLOPS
Application version	UK Met Office FAMOUS v6.11 i686-apple-darwin
Stderr	<core_client_version>6.10.17</core_client_version> <![CDATA[ <message> process exited with code 22 (0x16, -234) </message> <stderr_txt> ions. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00012 Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage4_kk_2 ... success! Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage4_kk_3 ... success! Starting work on structure: _00013 Starting work on structure: _00014 Starting work on structure: _00015 Starting work on structure: _00016 Starting work on structure: _00017 Starting work on structure: _00018 Starting work on structure: _00019 Starting work on structure: _00020 Starting work on structure: _00021 Starting work on structure: _00022 Starting work on structure: _00023 Starting work on structure: _00024 Starting work on structure: _00025 Starting work on structure: _00026 Starting work on structure: _00027 Starting work on structure: _00028 Starting work on structure: _00029 Starting work on structure: _00030 Starting work on structure: _00031 Starting work on structure: _00032 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 5-30 4:35:15:] :: BOINC:: Initializing ... ok. [2010- 5-30 4:35:15:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00032 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 5-30 4:36:50:] :: BOINC:: Initializing ... ok. [2010- 5-30 4:36:50:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00032 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 5-30 4:38:50:] :: BOINC:: Initializing ... ok. [2010- 5-30 4:38:50:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00032 Starting work on structure: _00033 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 5-30 23:16: 6:] :: BOINC:: Initializing ... ok. [2010- 5-30 23:16: 6:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00033 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 5-30 23:20:54:] :: BOINC:: Initializing ... ok. [2010- 5-30 23:20:54:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00033 Continuing computation from checkpoint: chk_S_00000033_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000033_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000033_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000033_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000033_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000033_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000033_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000033_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000033_ClassicAbinitio__stage_3_iter1_7 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 5-30 23:24:20:] :: BOINC:: Initializing ... ok. [2010- 5-30 23:24:20:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00033 Continuing computation from checkpoint: chk_S_00000033_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000033_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000033_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000033_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000033_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000033_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000033_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000033_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000033_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000033_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000033_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000033_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000033_ClassicAbinitio__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00000033_ClassicAbinitio__stage4_kk_2 ... success! Starting work on structure: _00034 Starting work on structure: _00035 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 5-31 0:36:12:] :: BOINC:: Initializing ... ok. [2010- 5-31 0:36:12:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00035 Continuing computation from checkpoint: chk_S_00000035_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000035_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000035_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000035_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000035_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000035_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000035_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000035_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000035_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000035_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000035_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000035_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000035_ClassicAbinitio__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00000035_ClassicAbinitio__stage4_kk_2 ... success! Continuing computation from checkpoint: chk_S_00000035_ClassicAbinitio__stage4_kk_3 ... success! Starting work on structure: _00036 ====================================================== DONE :: 1 starting structures 10547.6 cpu seconds This process generated 36 decoys from 36 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 6- 1 7: 9:56:] :: BOINC:: Initializing ... ok. [2010- 6- 1 7: 9:57:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lrm_jorj_combined_torsion_it05_run01_A.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr13_1hz6.fix.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 6- 1 7:30:10:] :: BOINC:: Initializing ... ok. [2010- 6- 1 7:30:10:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lrm_jorj_combined_torsion_it05_run01_A.zip Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr13_1hz6.fix.out.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. Fullatom mode .. ====================================================== DONE :: 112 starting structures 9400.79 cpu seconds This process generated 112 decoys from 112 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 6- 1 9:55:16:] :: BOINC:: Initializing ... ok. [2010- 6- 1 9:55:16:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 6- 1 10: 2:52:] :: BOINC:: Initializing ... ok. [2010- 6- 1 10: 2:52:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 6- 2 9:56:15:] :: BOINC:: Initializing ... ok. [2010- 6- 2 9:56:15:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 6- 2 10:18:53:] :: BOINC:: Initializing ... ok. [2010- 6- 2 10:18:53:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 6- 3 11:31:40:] :: BOINC:: Initializing ... ok. [2010- 6- 3 11:31:40:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. ====================================================== DONE :: 461 starting structures 5715.38 cpu seconds This process generated 461 decoys from 461 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 6- 8 1:56:28:] :: BOINC:: Initializing ... ok. [2010- 6- 8 1:56:28:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Starting work on structure: _00002 [2010- 6- 8 2:19:40:] :: BOINC:: Initializing ... ok. [2010- 6- 8 2:19:40:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00002 Starting work on structure: _00003 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 6- 8 2:58:11:] :: BOINC:: Initializing ... ok. [2010- 6- 8 2:58:11:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00003 Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage4_kk_2 ... success! Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage4_kk_3 ... success! Starting work on structure: _00004 Starting work on structure: _00005 Starting work on structure: _00006 Starting work on structure: _00007 Starting work on structure: _00008 Starting work on structure: _00009 Starting work on structure: _00010 Starting work on structure: _00011 Starting work on structure: _00012 Starting work on structure: _00013 Starting work on structure: _00014 Starting work on structure: _00015 Starting work on structure: _00016 Starting work on structure: _00017 Starting work on structure: _00018 Starting work on structure: _00019 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 6- 8 14:14:17:] :: BOINC:: Initializing ... ok. [2010- 6- 8 14:14:17:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00019 Continuing computation from checkpoint: chk_S_00000019_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000019_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000019_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000019_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000019_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000019_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000019_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000019_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000019_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000019_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000019_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000019_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000019_ClassicAbinitio__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00000019_ClassicAbinitio__stage4_kk_2 ... success! Continuing computation from checkpoint: chk_S_00000019_ClassicAbinitio__stage4_kk_3 ... success! Continuing computation from checkpoint: chk_stage_1_ClassicRelax__S_00000019_fa ... success! Continuing computation from checkpoint: chk_stage_2_ClassicRelax__S_00000019_fa ... success! Starting work on structure: _00020 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 6- 8 15: 3:14:] :: BOINC:: Initializing ... ok. [2010- 6- 8 15: 3:14:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00020 Starting work on structure: _00021 Starting work on structure: _00022 Starting work on structure: _00023 Starting work on structure: _00024 Starting work on structure: _00025 Starting work on structure: _00026 Starting work on structure: _00027 ====================================================== DONE :: 1 starting structures 10838.8 cpu seconds This process generated 27 decoys from 27 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 6- 8 16: 4:30:] :: BOINC:: Initializing ... ok. [2010- 6- 8 16: 4:30:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Starting work on structure: _00002 Starting work on structure: _00003 Starting work on structure: _00004 Starting work on structure: _00005 Starting work on structure: _00006 Starting work on structure: _00007 Starting work on structure: _00008 Starting work on structure: _00009 Starting work on structure: _00010 Starting work on structure: _00011 Starting work on structure: _00012 Starting work on structure: _00013 Starting work on structure: _00014 Starting work on structure: _00015 Starting work on structure: _00016 Starting work on structure: _00017 Starting work on structure: _00018 Starting work on structure: _00019 Starting work on structure: _00020 Starting work on structure: _00021 Starting work on structure: _00022 Starting work on structure: _00023 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 6- 8 19:27:27:] :: BOINC:: Initializing ... ok. [2010- 6- 8 19:27:27:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00023 Continuing computation from checkpoint: chk_S_00000023_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000023_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000023_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000023_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000023_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000023_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000023_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000023_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000023_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000023_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000023_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000023_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000023_ClassicAbinitio__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00000023_ClassicAbinitio__stage4_kk_2 ... success! Continuing computation from checkpoint: chk_S_00000023_ClassicAbinitio__stage4_kk_3 ... success! Continuing computation from checkpoint: chk_stage_1_ClassicRelax__S_00000023_fa ... success! Continuing computation from checkpoint: chk_stage_2_ClassicRelax__S_00000023_fa ... success! Starting work on structure: _00024 ====================================================== DONE :: 1 starting structures 10795.5 cpu seconds This process generated 24 decoys from 24 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 6- 8 19:38:54:] :: BOINC:: Initializing ... ok. [2010- 6- 8 19:38:54:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Starting work on structure: _00002 Starting work on structure: _00003 Starting work on structure: _00004 Starting work on structure: _00005 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 6- 9 0:19:42:] :: BOINC:: Initializing ... ok. [2010- 6- 9 0:19:42:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00005 Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000005_ClassicAbinitio__stage_3_iter1_10 ... success! Starting work on structure: _00006 Starting work on structure: _00007 Starting work on structure: _00008 Starting work on structure: _00009 Starting work on structure: _00010 Starting work on structure: _00011 Starting work on structure: _00012 ====================================================== DONE :: 1 starting structures 10537 cpu seconds This process generated 12 decoys from 12 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 6- 9 11:49:31:] :: BOINC:: Initializing ... ok. [2010- 6- 9 11:49:31:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 6- 9 16:15:28:] :: BOINC:: Initializing ... ok. [2010- 6- 9 16:15:28:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. ====================================================== DONE :: 328 starting structures 7850.52 cpu seconds This process generated 328 decoys from 328 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 6-18 0:16:36:] :: BOINC:: Initializing ... ok. [2010- 6-18 0:16:36:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 6-18 1:48:58:] :: BOINC:: Initializing ... ok. [2010- 6-18 1:48:58:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. ====================================================== DONE :: 39 starting structures 5708.59 cpu seconds This process generated 39 decoys from 39 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 6-27 0:58:25:] :: BOINC:: Initializing ... ok. [2010- 6-27 0:58:25:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 6-27 3:16:25:] :: BOINC:: Initializing ... ok. [2010- 6-27 3:16:25:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 6-27 3:37:23:] :: BOINC:: Initializing ... ok. [2010- 6-27 3:37:23:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 6-27 3:55:43:] :: BOINC:: Initializing ... ok. [2010- 6-27 3:55:43:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip [2010- 6-27 3:56:19:] :: BOINC:: Initializing ... ok. [2010- 6-27 3:56:19:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. ====================================================== DONE :: 259 starting structures 5512.43 cpu seconds This process generated 259 decoys from 259 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 6-29 7: 7:18:] :: BOINC:: Initializing ... ok. [2010- 6-29 7: 7:18:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/rb_06_21_214_777_rs_stg0_lrlx_t000__casp9.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 6-29 12:22:31:] :: BOINC:: Initializing ... ok. [2010- 6-29 12:22:31:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/rb_06_21_214_777_rs_stg0_lrlx_t000__casp9.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_3COIA_10011_0001_Loopbuild__initial_build ... success! Continuing computation from checkpoint: chk_S_3COIA_10011_0001_FastRelax__chk1_fa ... success! Continuing computation from checkpoint: chk_S_3COIA_10011_0001_FastRelax__chk2_fa ... success! Continuing computation from checkpoint: chk_S_3COIA_10011_0001_FastRelax__chk3_fa ... success! Continuing computation from checkpoint: chk_S_3COIA_10011_0001_FastRelax__chk4_fa ... success! Continuing computation from checkpoint: chk_S_3COIA_10011_0001_FastRelax__chk5_fa ... success! Continuing computation from checkpoint: chk_S_3COIA_10011_0001_FastRelax__chk6_fa ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 6-29 23:32: 0:] :: BOINC:: Initializing ... ok. [2010- 6-29 23:32: 0:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/rb_06_21_214_777_rs_stg0_lrlx_t000__casp9.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_3COIA_10011_0001_Loopbuild__initial_build ... success! Continuing computation from checkpoint: chk_S_3COIA_10011_0001_FastRelax__chk1_fa ... success! Continuing computation from checkpoint: chk_S_3COIA_10011_0001_FastRelax__chk2_fa ... success! Continuing computation from checkpoint: chk_S_3COIA_10011_0001_FastRelax__chk3_fa ... success! Continuing computation from checkpoint: chk_S_3COIA_10011_0001_FastRelax__chk4_fa ... success! Continuing computation from checkpoint: chk_S_3COIA_10011_0001_FastRelax__chk5_fa ... success! Continuing computation from checkpoint: chk_S_3COIA_10011_0001_FastRelax__chk6_fa ... success! ====================================================== DONE :: 2 starting structures 10375 cpu seconds This process generated 2 decoys from 2 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 6-30 2: 1:38:] :: BOINC:: Initializing ... ok. [2010- 6-30 2: 1:38:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/ab_06_19_d000_top_broker_server_models.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. ====================================================== DONE :: 5 starting structures 10083.4 cpu seconds This process generated 5 decoys from 5 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... Model crashed: ATM_DYN : INVALID THETA DETECTED. tmp/pipe_dummy SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.4 build 10F569 Sun Jul 4 15:53:05 2010 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x95f7f1fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x95f190fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec ss: 0x0000001f efl: 0x00000206 eip: 0x95f190fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_r217_799_200_006666443/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_r217_799_200_006666443/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_r217_799_200_006666443/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_r217_799_200_006666443/lib/libirc.dylib 0x93c21000 - 0x93c24fff /usr/lib/system/libmathCommon.A.dylib 0x95f18000 - 0x960befff /usr/lib/libSystem.B.dylib 0x964d6000 - 0x964e4fff /usr/lib/libz.1.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=2387, iMonCtr=1 Model crash detected, will try to restart... Model crashed: ATM_DYN : INVALID THETA DETECTED. tmp/pipe_dummy Model crashed: ATM_DYN : INVALID THETA DETECTED. tmp/pipe_dummy Model crashed: ATM_DYN : INVALID THETA DETECTED. tmp/pipe_dummy Model crashed: ATM_DYN : INVALID THETA DETECTED. tmp/pipe_dummy Sorry, too many model crashes! :-( (2387): called boinc_finish </stderr_txt> ]]>

Latest Trickles Received
Time Sent (UTC)	Host ID	Result ID	Result Name	Timestep	CPU Time (sec)	Average (sec/TS)
04 Jul 2010 06:44:45	844607	11593444	famous_r217_799_200_006666443_5	84,266	13,016	0.1545
01 Jul 2010 09:43:52	844607	11593444	famous_r217_799_200_006666443_5	74,906	11,554	0.1542
30 Jun 2010 13:27:11	844607	11593444	famous_r217_799_200_006666443_5	65,546	10,096	0.1540
30 Jun 2010 02:19:24	844607	11593444	famous_r217_799_200_006666443_5	56,186	8,639	0.1538
30 Jun 2010 01:56:17	844607	11593444	famous_r217_799_200_006666443_5	46,826	7,192	0.1536
30 Jun 2010 01:32:27	844607	11593444	famous_r217_799_200_006666443_5	37,466	5,746	0.1534
30 Jun 2010 01:24:16	844607	11593444	famous_r217_799_200_006666443_5	28,106	4,305	0.1532
30 Jun 2010 01:24:14	844607	11593444	famous_r217_799_200_006666443_5	18,746	2,869	0.1530
30 Jun 2010 00:28:09	844607	11593444	famous_r217_799_200_006666443_5	9,386	1,439	0.1533