<core_client_version>6.10.17</core_client_version>
<![CDATA[
<stderr_txt>
-30 9:13: 3:] :: BOINC:: Initializing ... ok.
[2010- 7-30 9:13: 3:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00003
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_1 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_2 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_1 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_2 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_3 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_4 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_5 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_6 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_7 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_8 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_9 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage_3_iter1_10 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage4_kk_1 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage4_kk_2 ... success!
Continuing computation from checkpoint: chk_S_00000003_ClassicAbinitio__stage4_kk_3 ... success!
Starting work on structure: _00004
Starting work on structure: _00005
Starting work on structure: _00006
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-30 13:32: 6:] :: BOINC:: Initializing ... ok.
[2010- 7-30 13:32: 6:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00006
Starting work on structure: _00007
======================================================
DONE :: 1 starting structures 10122.9 cpu seconds
This process generated 7 decoys from 7 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 7-30 23:36:34:] :: BOINC:: Initializing ... ok.
[2010- 7-30 23:36:34:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_ophs_combined_torsion_it07_run01_A.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_1fna.out.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 7-31 2:50:18:] :: BOINC:: Initializing ... ok.
[2010- 7-31 2:50:18:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_ophs_combined_torsion_it07_run01_A.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_1fna.out.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
======================================================
DONE :: 46 starting structures 10533.4 cpu seconds
This process generated 46 decoys from 46 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 7-31 19:15:18:] :: BOINC:: Initializing ... ok.
[2010- 7-31 19:15:18:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lrm_ophs_combined_torsion_it07_run01_A.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr13_2hsh.fix.out.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
======================================================
DONE :: 70 starting structures 10716.4 cpu seconds
This process generated 70 decoys from 70 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 7-31 22:15:20:] :: BOINC:: Initializing ... ok.
[2010- 7-31 22:15:20:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lrm_ophs_combined_torsion_it07_run01_A.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr8_4ubp.fix.out.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
======================================================
DONE :: 64 starting structures 10795.2 cpu seconds
This process generated 64 decoys from 64 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 8- 1 1:16:59:] :: BOINC:: Initializing ... ok.
[2010- 8- 1 1:16:59:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00001
Starting work on structure: _00002
Starting work on structure: _00003
Starting work on structure: _00004
Starting work on structure: _00005
Starting work on structure: _00006
Starting work on structure: _00007
Starting work on structure: _00008
Starting work on structure: _00009
Starting work on structure: _00010
Starting work on structure: _00011
======================================================
DONE :: 1 starting structures 10107 cpu seconds
This process generated 11 decoys from 11 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 8- 1 4: 7:25:] :: BOINC:: Initializing ... ok.
[2010- 8- 1 4: 7:25:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/rs_stg1_core_reb_sasa_vol_t288__run1.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
[2010- 8- 1 6:40:36:] :: BOINC:: Initializing ... ok.
[2010- 8- 1 6:40:36:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/rs_stg1_core_reb_sasa_vol_t288__run1.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 8- 1 7:27:22:] :: BOINC:: Initializing ... ok.
[2010- 8- 1 7:27:22:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/rs_stg1_core_reb_sasa_vol_t288__run1.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 8- 1 7:52:22:] :: BOINC:: Initializing ... ok.
[2010- 8- 1 7:52:22:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/rs_stg1_core_reb_sasa_vol_t288__run1.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00002_0000359_001_0072_FragmentSampler__stage1 ... success!
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 8- 1 23:12:59:] :: BOINC:: Initializing ... ok.
[2010- 8- 1 23:12:59:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/rs_stg1_core_reb_sasa_vol_t288__run1.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Continuing computation from checkpoint: chk_S_00002_0000359_001_0072_FragmentSampler__stage1 ... success!
Continuing computation from checkpoint: chk_S_00002_0000359_001_0072_FragmentSampler__stage2 ... success!
Continuing computation from checkpoint: chk_S_00002_0000359_001_0072_FragmentSampler__stage3 ... success!
Continuing computation from checkpoint: chk_S_00002_0000359_001_0072_FragmentSampler__stage4_kk_1 ... success!
Continuing computation from checkpoint: chk_S_00002_0000359_001_0072_FragmentSampler__stage4_kk_2 ... success!
Continuing computation from checkpoint: chk_S_00002_0000359_001_0072_FragmentSampler__stage4_kk_3 ... success!
======================================================
DONE :: 9 starting structures 10163.8 cpu seconds
This process generated 9 decoys from 9 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 8- 1 23:35:16:] :: BOINC:: Initializing ... ok.
[2010- 8- 1 23:35:16:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 8- 2 1:24: 5:] :: BOINC:: Initializing ... ok.
[2010- 8- 2 1:24: 5:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 8- 2 2:13:55:] :: BOINC:: Initializing ... ok.
[2010- 8- 2 2:13:55:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 8- 2 3:40:42:] :: BOINC:: Initializing ... ok.
[2010- 8- 2 3:40:42:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
======================================================
DONE :: 345 starting structures 6137.54 cpu seconds
This process generated 345 decoys from 345 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 8- 2 3:42:12:] :: BOINC:: Initializing ... ok.
[2010- 8- 2 3:42:12:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_ophs_combined_torsion_it07_run01_A.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_1ig5.out.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 8- 2 4:59:53:] :: BOINC:: Initializing ... ok.
[2010- 8- 2 4:59:53:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_ophs_combined_torsion_it07_run01_A.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_1ig5.out.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
======================================================
DONE :: 56 starting structures 10665.5 cpu seconds
This process generated 56 decoys from 56 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 8- 2 7:16:48:] :: BOINC:: Initializing ... ok.
[2010- 8- 2 7:16:48:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lrm_ophs_combined_torsion_it07_run01_A.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr13_1tit.fix.out.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 8- 2 23:56:56:] :: BOINC:: Initializing ... ok.
[2010- 8- 2 23:56:56:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lrm_ophs_combined_torsion_it07_run01_A.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr13_1tit.fix.out.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Fullatom mode ..
Fullatom mode ..
======================================================
DONE :: 73 starting structures 10958.1 cpu seconds
This process generated 73 decoys from 73 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 8- 3 0:17:53:] :: BOINC:: Initializing ... ok.
[2010- 8- 3 0:17:53:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
======================================================
DONE :: 949 starting structures 10796.4 cpu seconds
This process generated 949 decoys from 949 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 8- 3 3:18:28:] :: BOINC:: Initializing ... ok.
[2010- 8- 3 3:18:28:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00001
Starting work on structure: _00002
Starting work on structure: _00003
Starting work on structure: _00004
Starting work on structure: _00005
Starting work on structure: _00006
Starting work on structure: _00007
Starting work on structure: _00008
Starting work on structure: _00009
Starting work on structure: _00010
Starting work on structure: _00011
Starting work on structure: _00012
Starting work on structure: _00013
Starting work on structure: _00014
Starting work on structure: _00015
Starting work on structure: _00016
Starting work on structure: _00017
Starting work on structure: _00018
Starting work on structure: _00019
Starting work on structure: _00020
Starting work on structure: _00021
======================================================
DONE :: 1 starting structures 10474 cpu seconds
This process generated 21 decoys from 21 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 8- 3 6:13:24:] :: BOINC:: Initializing ... ok.
[2010- 8- 3 6:13:24:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
Setting up folding (abrelax) ...
Beginning folding (abrelax) ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Starting work on structure: _00001
Starting work on structure: _00002
Starting work on structure: _00003
Starting work on structure: _00004
Starting work on structure: _00005
Starting work on structure: _00006
Starting work on structure: _00007
Starting work on structure: _00008
Starting work on structure: _00009
Starting work on structure: _00010
Starting work on structure: _00011
Starting work on structure: _00012
Starting work on structure: _00013
Starting work on structure: _00014
Starting work on structure: _00015
Starting work on structure: _00016
Starting work on structure: _00017
Starting work on structure: _00018
Starting work on structure: _00019
Starting work on structure: _00020
Starting work on structure: _00021
Starting work on structure: _00022
Starting work on structure: _00023
Starting work on structure: _00024
Starting work on structure: _00025
Starting work on structure: _00026
Starting work on structure: _00027
Starting work on structure: _00028
Starting work on structure: _00029
Starting work on structure: _00030
Starting work on structure: _00031
Starting work on structure: _00032
Starting work on structure: _00033
Starting work on structure: _00034
Starting work on structure: _00035
Starting work on structure: _00036
Starting work on structure: _00037
Starting work on structure: _00038
Starting work on structure: _00039
Starting work on structure: _00040
Starting work on structure: _00041
Starting work on structure: _00042
Starting work on structure: _00043
Starting work on structure: _00044
Starting work on structure: _00045
Starting work on structure: _00046
Starting work on structure: _00047
Starting work on structure: _00048
Starting work on structure: _00049
Starting work on structure: _00050
Starting work on structure: _00051
Starting work on structure: _00052
======================================================
DONE :: 1 starting structures 10606.5 cpu seconds
This process generated 52 decoys from 52 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
[2010- 8- 4 5:50:58:] :: BOINC:: Initializing ... ok.
[2010- 8- 4 5:50:58:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_jorj_combined_torsion_it05_run01_A.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_2ccv.out.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Fullatom mode ..
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 8- 4 5:55:17:] :: BOINC:: Initializing ... ok.
[2010- 8- 4 5:55:17:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
[2010- 8- 4 6:27:27:] :: BOINC:: Initializing ... ok.
[2010- 8- 4 6:27:27:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_jorj_combined_torsion_it05_run01_A.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_2ccv.out.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Fullatom mode ..
Continuing computation from checkpoint: chk_F_00001_0000551_0_0001_FastRelax__chk1_fa ... success!
Continuing computation from checkpoint: chk_F_00001_0000551_0_0001_FastRelax__chk2_fa ... success!
Continuing computation from checkpoint: chk_F_00001_0000551_0_0001_FastRelax__chk3_fa ... success!
Continuing computation from checkpoint: chk_F_00001_0000551_0_0001_FastRelax__chk4_fa ... success!
Continuing computation from checkpoint: chk_F_00001_0000551_0_0001_FastRelax__chk5_fa ... success!
Continuing computation from checkpoint: chk_F_00001_0000551_0_0001_FastRelax__chk6_fa ... success!
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
Fullatom mode ..
No heartbeat from core client for 30 sec - exiting
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 8- 4 9:11:34:] :: BOINC:: Initializing ... ok.
[2010- 8- 4 9:11:34:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_jorj_combined_torsion_it05_run01_A.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_2ccv.out.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Fullatom mode ..
FILE_LOCK::unlock(): close failed.: Bad file descriptor
[2010- 8- 4 9:18: 8:] :: BOINC:: Initializing ... ok.
[2010- 8- 4 9:18: 8:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_jorj_combined_torsion_it05_run01_A.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_2ccv.out.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
[2010- 8- 4 13:10:33:] :: BOINC:: Initializing ... ok.
[2010- 8- 4 13:10:33:] :: BOINC :: boinc_init()
BOINC:: Setting up shared resources ... ok.
BOINC:: Setting up semaphores ... ok.
BOINC:: Updating status ... ok.
BOINC:: Registering timer callback... ok.
BOINC:: Worker initialized successfully.
Registering options..
Registered extra options.
Initializing broker options ...
Registered extra options.
Initializing core...
Initializing options.... ok
Options::initialize()
Options::adding_options()
Options::initialize() Check specs.
Options::initialize() End reached
Loaded options.... ok
Processed options.... ok
Initializing random generators... ok
Initialization complete.
Setting WU description ...
Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip
Unpacking WU data ...
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/yfsong_lr5_jorj_combined_torsion_it05_run01_A.zip
Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/lr5_2ccv.out.zip
Setting database description ...
Setting up checkpointing ...
Setting up graphics native ...
BOINC:: Worker startup.
Starting watchdog...
Watchdog active.
Fullatom mode ..
Continuing computation from checkpoint: chk_F_00005_0001038_0_0001_FastRelax__chk1_fa ... success!
Continuing computation from checkpoint: chk_F_00005_0001038_0_0001_FastRelax__chk2_fa ... success!
Continuing computation from checkpoint: chk_F_00005_0001038_0_0001_FastRelax__chk3_fa ... success!
Continuing computation from checkpoint: chk_F_00005_0001038_0_0001_FastRelax__chk4_fa ... success!
Continuing computation from checkpoint: chk_F_00005_0001038_0_0001_FastRelax__chk5_fa ... success!
Continuing computation from checkpoint: chk_F_00005_0001038_0_0001_FastRelax__chk6_fa ... success!
Fullatom mode ..
======================================================
DONE :: 31 starting structures 7184.41 cpu seconds
This process generated 31 decoys from 31 attempts
======================================================
BOINC :: Watchdog shutting down...
BOINC :: BOINC support services shutting down cleanly ...
called boinc_finish
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
BUFFIN: Read Failed: No such file or directory
BUFFIN: C I/O Error feof - Unit 60 - Return code = 1
BUFFIN: Read Failed: No such file or directory
BUFFIN: C I/O Error feof - Unit 61 - Return code = 1
BUFFIN: Read Failed: No such file or directory
BUFFIN: C I/O Error feof - Unit 68 - Return code = 1
BUFFIN: Read Failed: No such file or directory
BUFFIN: C I/O Error feof - Unit 69 - Return code = 1
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
SIGSEGV: segmentation violation
Crashed executable name: famous_um_6.11_i686-apple-darwin
built using BOINC library version 6.11.1
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.6.4 build 10F569
Tue Aug 10 03:24:14 2010
sh: /usr/bin/atos: No such file or directory
0 0x0048fdcf 1 0x0049054a 2 0x94ca01fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x003f5826 7 0x00450bd8 8 0x004698c0 9 0x000026b6 10 0x000025dd
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffd47c edx: 0x94c3a0fa
edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffd4b8 esp: 0xbfffd47c
ss: 0x0000001f efl: 0x00000206 eip: 0x94c3a0fa cs: 0x00000007
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037
Binary Images Description:
0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin
0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libsvml.dylib
0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libifcoremt.dylib
0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libimf.dylib
0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libirc.dylib
0x90eef000 - 0x90ef2fff /usr/lib/system/libmathCommon.A.dylib
0x93aab000 - 0x93ab9fff /usr/lib/libz.1.dylib
0x94c39000 - 0x94ddffff /usr/lib/libSystem.B.dylib
Exiting...
Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=4920, iMonCtr=1
Model crash detected, will try to restart...
SIGSEGV: segmentation violation
Crashed executable name: famous_um_6.11_i686-apple-darwin
built using BOINC library version 6.11.1
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.6.4 build 10F569
Tue Aug 10 03:24:17 2010
sh: /usr/bin/atos: No such file or directory
0 0x0048fdcf 1 0x0049054a 2 0x94ca01fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x003f5826 7 0x00450bd8 8 0x004698c0 9 0x000026b6 10 0x000025dd
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffd47c edx: 0x94c3a0fa
edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffd4b8 esp: 0xbfffd47c
ss: 0x0000001f efl: 0x00000206 eip: 0x94c3a0fa cs: 0x00000007
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037
Binary Images Description:
0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin
0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libsvml.dylib
0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libifcoremt.dylib
0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libimf.dylib
0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libirc.dylib
0x90eef000 - 0x90ef2fff /usr/lib/system/libmathCommon.A.dylib
0x93aab000 - 0x93ab9fff /usr/lib/libz.1.dylib
0x94c39000 - 0x94ddffff /usr/lib/libSystem.B.dylib
Exiting...
Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=4920, iMonCtr=1
Model crash detected, will try to restart...
(4920): No heartbeat from core client for 30 sec - exiting
CPDN Monitor - No 'heartbeat' from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
SIGSEGV: segmentation violation
Crashed executable name: famous_um_6.11_i686-apple-darwin
built using BOINC library version 6.11.1
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.6.4 build 10F569
Wed Aug 11 13:56:32 2010
sh: /usr/bin/atos: No such file or directory
0 0x0048fdcf 1 0x0049054a 2 0x94ca01fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x003f5826 7 0x00450bd8 8 0x004698c0 9 0x000026b6 10 0x000025dd
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffd47c edx: 0x94c3a0fa
edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffd4b8 esp: 0xbfffd47c
ss: 0x0000001f efl: 0x00000206 eip: 0x94c3a0fa cs: 0x00000007
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037
Binary Images Description:
0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin
0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libsvml.dylib
0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libifcoremt.dylib
0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libimf.dylib
0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libirc.dylib
0x90eef000 - 0x90ef2fff /usr/lib/system/libmathCommon.A.dylib
0x93aab000 - 0x93ab9fff /usr/lib/libz.1.dylib
0x94c39000 - 0x94ddffff /usr/lib/libSystem.B.dylib
Exiting...
Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=23260, iMonCtr=1
Model crash detected, will try to restart...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
SIGSEGV: segmentation violation
Crashed executable name: famous_um_6.11_i686-apple-darwin
built using BOINC library version 6.11.1
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.6.4 build 10F569
Wed Aug 11 15:45:07 2010
sh: /usr/bin/atos: No such file or directory
0 0x0048fdcf 1 0x0049054a 2 0x94ca01fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x94c3a0fa
edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec
ss: 0x0000001f efl: 0x00000206 eip: 0x94c3a0fa cs: 0x00000007
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037
Binary Images Description:
0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin
0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libsvml.dylib
0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libifcoremt.dylib
0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libimf.dylib
0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libirc.dylib
0x90eef000 - 0x90ef2fff /usr/lib/system/libmathCommon.A.dylib
0x93aab000 - 0x93ab9fff /usr/lib/libz.1.dylib
0x94c39000 - 0x94ddffff /usr/lib/libSystem.B.dylib
Exiting...
Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=25513, iMonCtr=1
Model crash detected, will try to restart...
SIGSEGV: segmentation violation
Crashed executable name: famous_um_6.11_i686-apple-darwin
built using BOINC library version 6.11.1
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.6.4 build 10F569
Wed Aug 11 15:45:10 2010
sh: /usr/bin/atos: No such file or directory
0 0x0048fdcf 1 0x0049054a 2 0x94ca01fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x002eeac6 7 0x003f55ea 8 0x00452abd 9 0x004698c0 10 0x000026b6 11 0x000025dd
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffc3ec edx: 0x94c3a0fa
edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffc428 esp: 0xbfffc3ec
ss: 0x0000001f efl: 0x00000206 eip: 0x94c3a0fa cs: 0x00000007
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037
Binary Images Description:
0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin
0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libsvml.dylib
0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libifcoremt.dylib
0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libimf.dylib
0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libirc.dylib
0x90eef000 - 0x90ef2fff /usr/lib/system/libmathCommon.A.dylib
0x93aab000 - 0x93ab9fff /usr/lib/libz.1.dylib
0x94c39000 - 0x94ddffff /usr/lib/libSystem.B.dylib
Exiting...
Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=25513, iMonCtr=1
Model crash detected, will try to restart...
CPDN Monitor - Quit request from BOINC...
SIGSEGV: segmentation violation
Crashed executable name: famous_um_6.11_i686-apple-darwin
built using BOINC library version 6.11.1
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.6.4 build 10F569
Wed Aug 11 20:06:28 2010
sh: /usr/bin/atos: No such file or directory
0 0x0048fdcf 1 0x0049054a 2 0x94ca01fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x003f5826 7 0x00450bd8 8 0x004698c0 9 0x000026b6 10 0x000025dd
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffd47c edx: 0x94c3a0fa
edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffd4b8 esp: 0xbfffd47c
ss: 0x0000001f efl: 0x00000206 eip: 0x94c3a0fa cs: 0x00000007
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037
Binary Images Description:
0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin
0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libsvml.dylib
0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libifcoremt.dylib
0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libimf.dylib
0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libirc.dylib
0x90eef000 - 0x90ef2fff /usr/lib/system/libmathCommon.A.dylib
0x93aab000 - 0x93ab9fff /usr/lib/libz.1.dylib
0x94c39000 - 0x94ddffff /usr/lib/libSystem.B.dylib
Exiting...
Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=35667, iMonCtr=1
Model crash detected, will try to restart...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
SIGSEGV: segmentation violation
Crashed executable name: famous_um_6.11_i686-apple-darwin
built using BOINC library version 6.11.1
Machine type Intel 80486 (32-bit executable)
System version: Macintosh OS 10.6.4 build 10F569
Thu Aug 12 08:29:14 2010
sh: /usr/bin/atos: No such file or directory
0 0x0048fdcf 1 0x0049054a 2 0x94ca01fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x003f5826 7 0x00450bd8 8 0x004698c0 9 0x000026b6 10 0x000025dd
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffd47c edx: 0x94c3a0fa
edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffd4b8 esp: 0xbfffd47c
ss: 0x0000001f efl: 0x00000206 eip: 0x94c3a0fa cs: 0x00000007
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037
Binary Images Description:
0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin
0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libsvml.dylib
0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libifcoremt.dylib
0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libimf.dylib
0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u8wn_1799_200_006644386/lib/libirc.dylib
0x90eef000 - 0x90ef2fff /usr/lib/system/libmathCommon.A.dylib
0x93aab000 - 0x93ab9fff /usr/lib/libz.1.dylib
0x94c39000 - 0x94ddffff /usr/lib/libSystem.B.dylib
Exiting...
Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=1101, iMonCtr=1
Model crash detected, will try to restart...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
CPDN Monitor - Quit request from BOINC...
(1070): called boinc_finish
</stderr_txt>
]]>