Task 11436929

Name	famous_u3dp_599_200_006637224_2
Workunit	6840596
Created	10 Jun 2010, 11:39:05 UTC
Sent	21 Jul 2010, 7:28:07 UTC
Report deadline	20 Oct 2010, 14:55:18 UTC
Received	21 Jul 2010, 23:56:54 UTC
Server state	Over
Outcome	Computation error
Client state	Compute error
Exit status	193 (0x000000C1) EXIT_SIGNAL
Computer ID	844607
Run time	25 min 36 sec
CPU time	25 min 7 sec
Validate state	Invalid
Credit	30.97
Device peak FLOPS	3.11 GFLOPS
Application version	UK Met Office FAMOUS v6.11 i686-apple-darwin
Stderr	<core_client_version>6.10.17</core_client_version> <![CDATA[ <message> process exited with code 193 (0xc1, -63) </message> <stderr_txt> 2_fa ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 7- 7 11:23:57:] :: BOINC:: Initializing ... ok. [2010- 7- 7 11:23:57:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 7- 8 12: 3:55:] :: BOINC:: Initializing ... ok. [2010- 7- 8 12: 3:55:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. ====================================================== DONE :: 20 starting structures 7582.34 cpu seconds This process generated 20 decoys from 20 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 7- 8 12:16:54:] :: BOINC:: Initializing ... ok. [2010- 7- 8 12:16:54:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 7-11 11:39:36:] :: BOINC:: Initializing ... ok. [2010- 7-11 11:39:36:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 7-13 11:22:31:] :: BOINC:: Initializing ... ok. [2010- 7-13 11:22:31:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 7-13 12:25:53:] :: BOINC:: Initializing ... ok. [2010- 7-13 12:25:53:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 7-13 13:32:21:] :: BOINC:: Initializing ... ok. [2010- 7-13 13:32:21:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 7-13 13:33: 7:] :: BOINC:: Initializing ... ok. [2010- 7-13 13:33: 7:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 7-13 13:42:54:] :: BOINC:: Initializing ... ok. [2010- 7-13 13:42:54:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 7-13 15:52:48:] :: BOINC:: Initializing ... ok. [2010- 7-13 15:52:48:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. ====================================================== DONE :: 352 starting structures 7476.44 cpu seconds This process generated 352 decoys from 352 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 7-17 10:43:37:] :: BOINC:: Initializing ... ok. [2010- 7-17 10:43:37:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 7-17 12:54: 2:] :: BOINC:: Initializing ... ok. [2010- 7-17 12:54: 2:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00026_SequenceRelax__chk1_fa ... success! Continuing computation from checkpoint: chk_S_00026_SequenceRelax__chk2_fa ... success! Continuing computation from checkpoint: chk_S_00026_SequenceRelax__chk3_fa ... success! Continuing computation from checkpoint: chk_S_00026_SequenceRelax__chk4_fa ... success! Continuing computation from checkpoint: chk_S_00026_SequenceRelax__chk5_fa ... success! Continuing computation from checkpoint: chk_S_00026_SequenceRelax__chk6_fa ... success! Continuing computation from checkpoint: chk_S_00026_SequenceRelax__chk7_fa ... success! Continuing computation from checkpoint: chk_S_00026_SequenceRelax__chk8_fa ... success! Continuing computation from checkpoint: chk_S_00026_SequenceRelax__chk9_fa ... success! Continuing computation from checkpoint: chk_S_00026_SequenceRelax__chk10_fa ... success! Continuing computation from checkpoint: chk_S_00026_SequenceRelax__chk11_fa ... success! Continuing computation from checkpoint: chk_S_00026_SequenceRelax__chk12_fa ... success! Continuing computation from checkpoint: chk_S_00026_SequenceRelax__chk13_fa ... success! Continuing computation from checkpoint: chk_S_00026_SequenceRelax__chk14_fa ... success! Continuing computation from checkpoint: chk_S_00026_SequenceRelax__chk15_fa ... success! Continuing computation from checkpoint: chk_S_00026_SequenceRelax__chk16_fa ... success! Continuing computation from checkpoint: chk_S_00026_SequenceRelax__chk17_fa ... success! Continuing computation from checkpoint: chk_S_00026_SequenceRelax__chk18_fa ... success! Continuing computation from checkpoint: chk_S_00026_SequenceRelax__chk19_fa ... success! Continuing computation from checkpoint: chk_S_00026_SequenceRelax__chk20_fa ... success! Continuing computation from checkpoint: chk_S_00026_SequenceRelax__chk21_fa ... success! Continuing computation from checkpoint: chk_S_00026_SequenceRelax__chk22_fa ... success! Continuing computation from checkpoint: chk_S_00026_SequenceRelax__chk23_fa ... success! Continuing computation from checkpoint: chk_S_00026_SequenceRelax__chk24_fa ... success! Continuing computation from checkpoint: chk_S_00026_SequenceRelax__chk25_fa ... success! Continuing computation from checkpoint: chk_S_00026_SequenceRelax__chk26_fa ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 7-17 13:36:23:] :: BOINC:: Initializing ... ok. [2010- 7-17 13:36:23:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip [2010- 7-17 15:30:34:] :: BOINC:: Initializing ... ok. [2010- 7-17 15:30:34:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk1_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk2_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk3_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk4_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk5_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk6_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk7_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk8_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk9_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk10_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk11_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk12_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk13_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk14_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk15_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk16_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk17_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk18_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk19_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk20_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk21_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk22_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk23_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk24_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk25_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk26_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk27_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk28_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk29_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk30_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk31_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk32_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk33_fa ... success! Continuing computation from checkpoint: chk_S_00034_SequenceRelax__chk34_fa ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 7-18 14:23:40:] :: BOINC:: Initializing ... ok. [2010- 7-18 14:23:40:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 7-18 14:30:30:] :: BOINC:: Initializing ... ok. [2010- 7-18 14:30:30:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk1_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk2_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk3_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk4_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk5_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk6_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk7_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk8_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk9_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk10_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk11_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk12_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk13_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk14_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk15_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk16_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk17_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk18_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk19_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk20_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk21_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk22_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk23_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk24_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk25_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk26_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk27_fa ... success! Continuing computation from checkpoint: chk_S_00035_SequenceRelax__chk28_fa ... success! ====================================================== DONE :: 36 starting structures 6036.97 cpu seconds This process generated 36 decoys from 36 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 7-18 14:35:45:] :: BOINC:: Initializing ... ok. [2010- 7-18 14:35:45:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Starting work on structure: _00002 Starting work on structure: _00003 Starting work on structure: _00004 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 7-18 15:47:10:] :: BOINC:: Initializing ... ok. [2010- 7-18 15:47:10:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00004 Starting work on structure: _00005 Starting work on structure: _00006 Starting work on structure: _00007 Starting work on structure: _00008 Starting work on structure: _00009 Starting work on structure: _00010 Starting work on structure: _00011 Starting work on structure: _00012 Starting work on structure: _00013 Starting work on structure: _00014 Starting work on structure: _00015 Starting work on structure: _00016 Starting work on structure: _00017 Starting work on structure: _00018 Starting work on structure: _00019 Starting work on structure: _00020 Starting work on structure: _00021 Starting work on structure: _00022 Starting work on structure: _00023 Starting work on structure: _00024 Starting work on structure: _00025 Starting work on structure: _00026 ====================================================== DONE :: 1 starting structures 10638.6 cpu seconds This process generated 26 decoys from 26 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 7-18 18:41:20:] :: BOINC:: Initializing ... ok. [2010- 7-18 18:41:20:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Starting work on structure: _00002 Starting work on structure: _00003 Starting work on structure: _00004 Starting work on structure: _00005 Starting work on structure: _00006 Starting work on structure: _00007 Starting work on structure: _00008 Starting work on structure: _00009 Starting work on structure: _00010 Starting work on structure: _00011 Starting work on structure: _00012 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 7-18 20:50:22:] :: BOINC:: Initializing ... ok. [2010- 7-18 20:50:22:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00012 Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000012_ClassicAbinitio__stage4_kk_1 ... success! Starting work on structure: _00013 Starting work on structure: _00014 Starting work on structure: _00015 Starting work on structure: _00016 Starting work on structure: _00017 Starting work on structure: _00018 Starting work on structure: _00019 ====================================================== DONE :: 1 starting structures 10598.7 cpu seconds This process generated 19 decoys from 19 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 7-18 22: 5: 5:] :: BOINC:: Initializing ... ok. [2010- 7-18 22: 5: 5:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Starting work on structure: _00002 Starting work on structure: _00003 Starting work on structure: _00004 Starting work on structure: _00005 Starting work on structure: _00006 Starting work on structure: _00007 Starting work on structure: _00008 Starting work on structure: _00009 Starting work on structure: _00010 Starting work on structure: _00011 Starting work on structure: _00012 Starting work on structure: _00013 Starting work on structure: _00014 Starting work on structure: _00015 Starting work on structure: _00016 Starting work on structure: _00017 Starting work on structure: _00018 Starting work on structure: _00019 Starting work on structure: _00020 Starting work on structure: _00021 Starting work on structure: _00022 Starting work on structure: _00023 Starting work on structure: _00024 Starting work on structure: _00025 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 7-19 12:55:32:] :: BOINC:: Initializing ... ok. [2010- 7-19 12:55:32:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00025 Continuing computation from checkpoint: chk_S_00000025_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000025_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000025_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000025_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000025_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000025_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000025_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000025_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000025_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000025_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000025_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000025_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000025_ClassicAbinitio__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00000025_ClassicAbinitio__stage4_kk_2 ... success! Continuing computation from checkpoint: chk_S_00000025_ClassicAbinitio__stage4_kk_3 ... success! Starting work on structure: _00026 Starting work on structure: _00027 Starting work on structure: _00028 Starting work on structure: _00029 Starting work on structure: _00030 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 7-19 13:23:55:] :: BOINC:: Initializing ... ok. [2010- 7-19 13:23:55:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. ====================================================== DONE :: 1 starting structures 10502.8 cpu seconds This process generated 29 decoys from 29 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 7-19 13:24:20:] :: BOINC:: Initializing ... ok. [2010- 7-19 13:24:20:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/rb_07_17_266_903_rs_stg0_lrlxjcst_t000__casp9.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 7-19 14:41:12:] :: BOINC:: Initializing ... ok. [2010- 7-19 14:41:12:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/rb_07_17_266_903_rs_stg0_lrlxjcst_t000__casp9.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 7-19 15: 5:45:] :: BOINC:: Initializing ... ok. [2010- 7-19 15: 5:45:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/rb_07_17_266_903_rs_stg0_lrlxjcst_t000__casp9.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_1MGPA_6_0001_Remodel__loop_1_0_0_S ... success! Continuing computation from checkpoint: chk_S_1MGPA_6_0001_Remodel__loop_2_0_0_F ... success! Continuing computation from checkpoint: chk_S_1MGPA_6_0001_Remodel__loop_2_1_0_S ... success! Continuing computation from checkpoint: chk_S_1MGPA_6_0001_Remodel__loop_3_1_1_S ... success! Continuing computation from checkpoint: chk_S_1MGPA_6_0001_Remodel__loop_4_0_1_F ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 7-19 15:43: 6:] :: BOINC:: Initializing ... ok. [2010- 7-19 15:43: 6:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Unpacking WU data ... Unpacking data: ../../projects/boinc.bakerlab.org_rosetta/rb_07_17_266_903_rs_stg0_lrlxjcst_t000__casp9.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Continuing computation from checkpoint: chk_S_1MGPA_6_0001_FastRelax__chk1_fa ... success! ====================================================== DONE :: 2 starting structures 7604.85 cpu seconds This process generated 2 decoys from 2 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 7-19 17:22: 5:] :: BOINC:: Initializing ... ok. [2010- 7-19 17:22: 5:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Starting work on structure: _00002 Starting work on structure: _00003 Starting work on structure: _00004 Starting work on structure: _00005 Starting work on structure: _00006 Starting work on structure: _00007 Starting work on structure: _00008 Starting work on structure: _00009 Starting work on structure: _00010 Starting work on structure: _00011 Starting work on structure: _00012 Starting work on structure: _00013 Starting work on structure: _00014 Starting work on structure: _00015 Starting work on structure: _00016 Starting work on structure: _00017 Starting work on structure: _00018 Starting work on structure: _00019 Starting work on structure: _00020 Starting work on structure: _00021 Starting work on structure: _00022 Starting work on structure: _00023 Starting work on structure: _00024 Starting work on structure: _00025 Starting work on structure: _00026 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 7-20 5:12:58:] :: BOINC:: Initializing ... ok. [2010- 7-20 5:12:58:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00026 Continuing computation from checkpoint: chk_S_00000026_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000026_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000026_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000026_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000026_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000026_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000026_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000026_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000026_ClassicAbinitio__stage_3_iter1_7 ... success! Starting work on structure: _00027 Starting work on structure: _00028 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 7-20 6: 8:59:] :: BOINC:: Initializing ... ok. [2010- 7-20 6: 8:59:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00028 Continuing computation from checkpoint: chk_S_00000028_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000028_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000028_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000028_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000028_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000028_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000028_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000028_ClassicAbinitio__stage_3_iter1_6 ... success! Starting work on structure: _00029 Starting work on structure: _00030 ====================================================== DONE :: 1 starting structures 10670.8 cpu seconds This process generated 30 decoys from 30 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish [2010- 7-20 6:23:33:] :: BOINC:: Initializing ... ok. [2010- 7-20 6:23:33:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00001 Starting work on structure: _00002 Starting work on structure: _00003 Starting work on structure: _00004 Starting work on structure: _00005 Starting work on structure: _00006 Starting work on structure: _00007 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 7-20 7:22:29:] :: BOINC:: Initializing ... ok. [2010- 7-20 7:22:29:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip [2010- 7-20 7:23:34:] :: BOINC:: Initializing ... ok. [2010- 7-20 7:23:34:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00007 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 7-20 13:50:43:] :: BOINC:: Initializing ... ok. [2010- 7-20 13:50:43:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00007 Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage4_kk_1 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage4_kk_2 ... success! Continuing computation from checkpoint: chk_S_00000007_ClassicAbinitio__stage4_kk_3 ... success! Starting work on structure: _00008 Starting work on structure: _00009 Starting work on structure: _00010 FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 7-21 0: 9:18:] :: BOINC:: Initializing ... ok. [2010- 7-21 0: 9:18:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00010 Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage4_kk_1 ... success! FILE_LOCK::unlock(): close failed.: Bad file descriptor [2010- 7-21 0:11:10:] :: BOINC:: Initializing ... ok. [2010- 7-21 0:11:10:] :: BOINC :: boinc_init() BOINC:: Setting up shared resources ... ok. BOINC:: Setting up semaphores ... ok. BOINC:: Updating status ... ok. BOINC:: Registering timer callback... ok. BOINC:: Worker initialized successfully. Registering options.. Registered extra options. Initializing broker options ... Registered extra options. Initializing core... Initializing options.... ok Options::initialize() Options::adding_options() Options::initialize() Check specs. Options::initialize() End reached Loaded options.... ok Processed options.... ok Initializing random generators... ok Initialization complete. Setting WU description ... Unpacking zip data: ../../projects/boinc.bakerlab.org_rosetta/minirosetta_database_rev36507.zip Setting database description ... Setting up checkpointing ... Setting up graphics native ... Setting up folding (abrelax) ... Beginning folding (abrelax) ... BOINC:: Worker startup. Starting watchdog... Watchdog active. Starting work on structure: _00010 Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_1 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_2 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_3_iter1_1 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_3_iter1_2 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_3_iter1_3 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_3_iter1_4 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_3_iter1_5 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_3_iter1_6 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_3_iter1_7 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_3_iter1_8 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_3_iter1_9 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage_3_iter1_10 ... success! Continuing computation from checkpoint: chk_S_00000010_ClassicAbinitio__stage4_kk_1 ... success! Starting work on structure: _00011 Starting work on structure: _00012 Starting work on structure: _00013 Starting work on structure: _00014 Starting work on structure: _00015 Starting work on structure: _00016 Starting work on structure: _00017 Starting work on structure: _00018 Starting work on structure: _00019 Starting work on structure: _00020 Starting work on structure: _00021 Starting work on structure: _00022 Starting work on structure: _00023 Starting work on structure: _00024 ====================================================== DONE :: 1 starting structures 10451 cpu seconds This process generated 24 decoys from 24 attempts ====================================================== BOINC :: Watchdog shutting down... BOINC :: BOINC support services shutting down cleanly ... called boinc_finish SIGSEGV: segmentation violation Crashed executable name: famous_um_6.11_i686-apple-darwin built using BOINC library version 6.11.1 Machine type Intel 80486 (32-bit executable) System version: Macintosh OS 10.6.4 build 10F569 Wed Jul 21 17:08:38 2010 sh: /usr/bin/atos: No such file or directory 0 0x0048fdcf 1 0x0049054a 2 0x95f7f1fb 3 0xffffffff 4 0x0134e6b3 5 0x0134d44f 6 0x003f5826 7 0x00450bd8 8 0x004698c0 9 0x000026b6 10 0x000025dd Thread 0 crashed with X86 Thread State (32-bit): eax: 0xffffffe1 ebx: 0x00000003 ecx: 0xbfffd47c edx: 0x95f190fa edi: 0x00000000 esi: 0x00000000 ebp: 0xbfffd4b8 esp: 0xbfffd47c ss: 0x0000001f efl: 0x00000206 eip: 0x95f190fa cs: 0x00000007 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 Binary Images Description: 0x1000 - 0x517fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_um_6.11_i686-apple-darwin 0x12a9000 - 0x12c4fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u3dp_599_200_006637224/lib/libsvml.dylib 0x131c000 - 0x13b3fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u3dp_599_200_006637224/lib/libifcoremt.dylib 0x13fc000 - 0x1556fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u3dp_599_200_006637224/lib/libimf.dylib 0x1669000 - 0x1697fff /Library/Application Support/BOINC Data/projects/climateprediction.net/famous_u3dp_599_200_006637224/lib/libirc.dylib 0x93c21000 - 0x93c24fff /usr/lib/system/libmathCommon.A.dylib 0x95f18000 - 0x960befff /usr/lib/libSystem.B.dylib 0x964d6000 - 0x964e4fff /usr/lib/libz.1.dylib Exiting... Controller:: CPDN process is not running, exiting, bRetVal = 1, checkPID=0, selfPID=4325, iMonCtr=1 Model crash detected, will try to restart... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... CPDN Monitor - Quit request from BOINC... Signal 3 received, exiting... (1128): called boinc_finish </stderr_txt> ]]>

Latest Trickles Received
Time Sent (UTC)	Host ID	Result ID	Result Name	Timestep	CPU Time (sec)	Average (sec/TS)
22 Jul 2010 00:00:37	844607	11436929	famous_u3dp_599_200_006637224_2	9,386	1,448	0.1543